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Volume 14, Issue 3, March 2024
Investigation
GPI-anchored Gas1 protein regulates cytosolic proteostasis in budding yeast
Identification of genetic and environmental factors influencing aerial root traits that support biological nitrogen fixation in sorghum
Select accessions of the cereal crop sorghum form mucilage-producing adventitious nodal roots that harbor nitrogen-fixing bacteria, which could contribute to agricultural sustainability by reducing the reliance on chemical fertilizers. Sorghum is gaining global interest as a versatile and climate-resilient crop. Wolf et al. report an effort to determine the genetic and environmental factors contributing to the formation of these so-called aerial roots as the basis for breeding programs aimed at sustainable production. Despite considerable phenotypic variation, the authors identify loci associated with the number of nodes with aerial roots and aerial root diameter.
Microbiome-enabled genomic selection improves prediction accuracy for nitrogen-related traits in maize
Deleterious phenotypes in wild Arabidopsis arenosa populations are common and linked to runs of homozygosity
Barragan et al. survey the progeny of wild Arabidopsis arenosa plants to determine the frequency of potentially deleterious phenotypes in natural populations, investigating the genetic basis of several such cases. They find a number of defects likely to decrease fitness in the wild; in some cases, those defects were associated with extended homozygosity at particular genomic regions. This study provides a methodological roadmap for detecting and comparing genetic architectures linked to deleterious phenotypes in wild self-incompatible plant populations.
Systematic profiling of ale yeast protein dynamics across fermentation and repitching
Drosophila models of phosphatidylinositol glycan biosynthesis class A congenital disorder of glycosylation (PIGA-CDG) mirror patient phenotypes
PIGA-CDG is a rare genetic disorder of glycosylation characterized by seizures, intellectual and developmental delay, and congenital malformations. Here, Thorpe, Owings, Aziz et al. generate and characterize several Drosophila models of PIGA-CDG. These models faithfully recapitulate different patient phenotypes, including movement disorder and seizures, indicating that Drosophila is a good model for PIGA-CDG and potentially other glycosylation disorders.
Knockdown of Kmt2d leads to growth impairment by activating the Akt/β-catenin signaling pathway
PBRM-1/PBAF-regulated genes in a multipotent progenitor in Caenorhabditis elegans
A comprehensive evolutionary scenario for the origin and neofunctionalization of the Drosophila speciation gene Odysseus (OdsH)
Evaluating evidence for co-geography in the Anopheles–Plasmodium host–parasite system
Allelic combinations of Hd1, Hd16, and Ghd7 exhibit pleiotropic effects on agronomic traits in rice
Gene expression variation underlying tissue-specific responses to copper stress in Drosophila melanogaster
The relationship between intraflagellar transport and upstream protein trafficking pathways and macrocyclic lactone resistance in Caenorhabditis elegans
Expression and potential regulatory functions of Drosophila octopamine receptors in the female reproductive tract
Differences in transcription initiation directionality underlie distinctions between plants and animals in chromatin modification patterns at genes and cis-regulatory elements
ProbBreed: a novel tool for calculating the risk of cultivar recommendation in multienvironment trials
Functional analysis of chromatin-associated proteins in Sordaria macrospora reveals similar roles for RTT109 and ASF1 in development and DNA damage response
Genome Report
A chromosome-level genome assembly of Zasmidium syzygii isolated from banana leaves
Chromosome-level genome of the transformable northern wattle, Acacia crassicarpa
Whole-genome sequence and annotation of Penstemon davidsonii
A chromosome-scale assembly for ‘d’Anjou’ pear
Yocca et al. present a fully-phased chromosome-scale genome assembly of the European pear P. communis “d'Anjou”. This assembly will allow for genome-assisted breeding and will thus increase the pace of improvement for this relatively recently-cultivated, economically-important tree species. Additionally, comparative genomic studies within the Rose family (Rosaceae) may provide insight into the evolutionary history of the European pear. The genome assembly, annotation, and analyses were produced in a semester-long undergraduate and graduate course as part of the ACTG: American Campus Tree Genomes Initiative.