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Current Issue of Genome Research
Table of Contents — January 2024, 34 (1)
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Table of Contents
January 2024; 34 (1)
Perspective
Select this article
Why community consultation matters in genomic research benefit-sharing models
Sarah LeBaron von Baeyer
,
Rebecca Crocker
,
Rindra Rakotoarivony
,
Jean Freddy Ranaivoarisoa
,
Germain Jules Spiral
,
Stephane Castel
,
Andrew Farnum
,
Holly Vance
,
Noah Collins
,
Keolu Fox
,
and
Kaja Wasik
Genome Res.
January 2024
34
:
1
-
6
;
Published in Advance
January 31, 2024
,
doi:
10.1101/gr.278308.123
Extract
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Research
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Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement
Peter A. Audano
and
Christine R. Beck
Genome Res.
January 2024
34
:
7
-
19
;
Published in Advance
January 4, 2024
,
doi:
10.1101/gr.278203.123
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
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Identification and validation of supervariants reveal novel loci associated with human white matter microstructure
Shiying Wang
,
Ting Li
,
Bingxin Zhao
,
Wei Dai
,
Yisha Yao
,
Cai Li
,
Tengfei Li
,
Hongtu Zhu
,
and
Heping Zhang
Genome Res.
January 2024
34
:
20
-
33
;
Published in Advance
December 12, 2023
,
doi:
10.1101/gr.277905.123
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
Select this article
Histone deacetylases maintain expression of the pluripotent gene network via recruitment of RNA polymerase II to coding and noncoding loci
Richard D.W. Kelly
,
Kristy R. Stengel
,
Aditya Chandru
,
Lyndsey C. Johnson
,
Scott W. Hiebert
,
and
Shaun M. Cowley
Genome Res.
January 2024
34
:
34
-
46
;
Published in Advance
January 30, 2024
,
doi:
10.1101/gr.278050.123
Abstract
Full Text
Full Text (PDF)
Supplemental Material
OPEN ACCESS ARTICLE
Select this article
Oxidative stress accelerates intestinal tumorigenesis by enhancing 8-oxoguanine-mediated mutagenesis in MUTYH-deficient mice
Mizuki Ohno
,
Noriko Takano
,
Kyoko Hidaka
,
Fumiko Sasaki
,
Kazumi Yamauchi
,
Yasunobu Aoki
,
Takehiko Nohmi
,
Yusaku Nakabeppu
,
Yoshimichi Nakatsu
,
and
Teruhisa Tsuzuki
Genome Res.
January 2024
34
:
47
-
56
;
Published in Advance
January 30, 2024
,
doi:
10.1101/gr.278326.123
Abstract
Full Text
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Supplemental Material
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Characterization of the distribution and dynamics of chromatin states in the
C. elegans
germline reveals substantial H3K4me3 remodeling during oogenesis
Mariateresa Mazzetto
,
Lauren E. Gonzalez
,
Nancy Sanchez
,
and
Valerie Reinke
Genome Res.
January 2024
34
:
57
-
69
;
Published in Advance
December 26, 2023
,
doi:
10.1101/gr.278247.123
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
Methods
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Aberrant landscapes of maternal meiotic crossovers contribute to aneuploidies in human embryos
Daniel Ariad
,
Svetlana Madjunkova
,
Mitko Madjunkov
,
Siwei Chen
,
Rina Abramov
,
Clifford Librach
,
and
Rajiv C. McCoy
Genome Res.
January 2024
34
:
70
-
84
;
Published in Advance
December 1, 2023
,
doi:
10.1101/gr.278168.123
Abstract
Full Text
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Supplemental Material
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A statistical learning method for simultaneous copy number estimation and subclone clustering with single-cell sequencing data
Fei Qin
,
Guoshuai Cai
,
Christopher I. Amos
,
and
Feifei Xiao
Genome Res.
January 2024
34
:
85
-
93
;
Published in Advance
January 30, 2024
,
doi:
10.1101/gr.278098.123
Abstract
Full Text
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Supplemental Material
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A Bayesian framework to study tumor subclone–specific expression by combining bulk DNA and single-cell RNA sequencing data
Yi Qiao
,
Xiaomeng Huang
,
Philip J. Moos
,
Jonathan M. Ahmann
,
Anthony D. Pomicter
,
Michael W. Deininger
,
John C. Byrd
,
Jennifer A. Woyach
,
Deborah M. Stephens
,
and
Gabor T. Marth
Genome Res.
January 2024
34
:
94
-
105
;
Published in Advance
January 9, 2024
,
doi:
10.1101/gr.278234.123
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
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Power-law behavior of transcriptional bursting regulated by enhancer–promoter communication
Zihao Wang
,
Zhenquan Zhang
,
Songhao Luo
,
Tianshou Zhou
,
and
Jiajun Zhang
Genome Res.
January 2024
34
:
106
-
118
;
Published in Advance
January 3, 2024
,
doi:
10.1101/gr.278631.123
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
Select this article
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE
Yingxin Lin
,
Tung-Yu Wu
,
Xi Chen
,
Sheng Wan
,
Brian Chao
,
Jingxue Xin
,
Jean Y.H. Yang
,
Wing H. Wong
,
and
Y.X. Rachel Wang
Genome Res.
January 2024
34
:
119
-
133
;
Published in Advance
December 15, 2023
,
doi:
10.1101/gr.277960.123
Abstract
Full Text
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OPEN ACCESS ARTICLE
Select this article
High-throughput and genome-scale targeted mutagenesis using CRISPR in a nonmodel multicellular organism,
Bombyx mori
Sanyuan Ma
,
Tong Zhang
,
Ruolin Wang
,
Pan Wang
,
Yue Liu
,
Jiasong Chang
,
Aoming Wang
,
Xinhui Lan
,
Le Sun
,
Hao Sun
,
Run Shi
,
Wei Lu
,
Dan Liu
,
Na Zhang
,
Wenbo Hu
,
Xiaogang Wang
,
Weiqing Xing
,
Ling Jia
,
and
Qingyou Xia
Genome Res.
January 2024
34
:
134
-
144
;
Published in Advance
January 8, 2024
,
doi:
10.1101/gr.278297.123
Abstract
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Supplemental Material
Resource
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GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis
Robyn L. Ball
,
Molly A. Bogue
,
Hongping Liang
,
Anuj Srivastava
,
David G. Ashbrook
,
Anna Lamoureux
,
Matthew W. Gerring
,
Alexander S. Hatoum
,
Matthew J. Kim
,
Hao He
,
Jake Emerson
,
Alexander K. Berger
,
David O. Walton
,
Keith Sheppard
,
Baha El Kassaby
,
Francisco Castellanos
,
Govindarajan Kunde-Ramamoorthy
,
Lu Lu
,
John Bluis
,
Sejal Desai
,
Beth A. Sundberg
,
Gary Peltz
,
Zhuoqing Fang
,
Gary A. Churchill
,
Robert W. Williams
,
Arpana Agrawal
,
Carol J. Bult
,
Vivek M. Philip
,
and
Elissa J. Chesler
Genome Res.
January 2024
34
:
145
-
159
;
Published in Advance
January 30, 2024
,
doi:
10.1101/gr.278157.123
Abstract
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Corrigendum
Select this article
Corrigendum: A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons
Qicheng Ma
,
Satyam P. Srivastav
,
Stephanie Gamez
,
Gargi Dayama
,
Fabiana Feitosa-Suntheimer
,
Edward I. Patterson
,
Rebecca M. Johnson
,
Erik M. Matson
,
Alexander S. Gold
,
Douglas E. Brackney
,
John H. Connor
,
Tonya M. Colpitts
,
Grant L. Hughes
,
Jason L. Rasgon
,
Tony Nolan
,
Omar S. Akbari
,
and
Nelson C. Lau
Genome Res.
January 2024
34
:
160
;
doi:
10.1101/gr.278898.123
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January 2024;
34
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Current Issue
January 2024, 34 (1)
From the Cover
Brain white matter supervariants
Ancestral bias in structural variant breakpoints
Histone deacetylases maintain pluripotency
Aneuploidies in human embryos
GenomeMUSter
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