Forthcoming Articles

This site is managed by Brian Golding. Note that entries are retained for only thirty days. Currently only GBE, JME, MBE, and PNAS (selected articles), are provided.

Other online access

- Bioinformatics - Biometrika - Evolution - Evol Applications
- GBE - Genome Research - Genetics - J.Bioinfo. & Comp. Biol.
- J.Mol.Evol. - MBE - Mol. Phylogenetics & Evol - Nature
- Nucl. Acids Res. - PNAS - Science - Systematic Biology

Articles added in the last thirty days:

Mar 29 08:00Loss of heterozygosity drives adaptation in hybrid yeast - Caiti S. Smukowski Heil et al. (MBE)
Mar 28 20:00Ancient recombination events between human herpes simplex viruses - Sonia Burrel et al. (MBE)
Mar 28 12:00Rapid genetic adaptation during the first four months of survival under resource exhaustion - Sarit Avrani, Evgeni Bolotin, Sophia Katz, Ruth Hershberg (MBE)
Mar 27 20:00Metabolic evolution and the self-organization of ecosystems - Rogier Braakman, Michael J. Follows, Sallie W. Chisholm (PNAS)
Mar 27 08:00Origin and evolution of the kiwifruit canker pandemic - Honour C. McCann et al. (GBE)
Mar 27 08:00A direct test of selection in cell populations using the diversity in gene expression within tumors - Chunyan Li et al. (MBE)
Mar 27 08:00Genome-Wide Identification Of The Mutation Underlying Fleece Variation And Discriminating Ancestral Hairy Species From Modern Woolly Sheep - Julie Demars et al. (MBE)
Mar 24 16:00Partner abundance controls mutualism stability and the pace of morphological change over geologic time - Guillaume Chomicki, Susanne S. Renner (PNAS)
Mar 23 08:00The Multipartite Mitochondrial Genome of Enteromyxum leei (Myxozoa): Eight Fast-Evolving Megacircles - Dayana Yahalomi et al. (MBE)
Mar 23 08:00Antagonistic Coevolution of MER Tyrosine Kinase Expression and Function. - Amanda L. Evans et al. (MBE)
Mar 22 12:00The Chlamydia suis Genome Exhibits High Levels of Diversity, Plasticity, and Mobile Antibiotic Resistance: Comparative Genomics of a Recent Livestock Cohort Shows Influence of Treatment Regimes - Helena M.B. Seth-Smith et al. (GBE)
Mar 22 12:00Duplications and Positive Selection Drive the Evolution of Parasitism-Associated Gene Families in the Nematode Strongyloides papillosus - Praveen Baskaran, Tegegn G. Jaleta, Adrian Streit, Christian Rödelsperger (GBE)
Mar 22 12:00Genome expression balance in a triploid trihybrid vertebrate - Kyle E. McElroy et al. (GBE)
Mar 22 12:00Night monkey hybrids exhibit de novo genomic and karyotypic alterations: the first such case in primates - Hirohisa Hirai et al. (GBE)
Mar 22 12:00Comparative genomics of Rhodococcus equi virulence plasmids indicates host-driven evolution of the vap pathogenicity island - Iain MacArthur et al. (GBE)
Mar 22 12:00Involvement of Clustered Genes in Mammalian Functions: Their Relation in a Rat Mutant Strain - Naoki Nanashima et al. (JME)
Mar 21 12:00Balancing selection maintains polymorphisms at neurogenetic loci in field experiments - Eija Lonn et al. (PNAS)
Mar 20 16:00Cerberus-Nodal-Lefty-Pitx signaling cascade controls left-right asymmetry in amphioxus - Guang Li et al. (PNAS)
Mar 20 16:00Mitochondrial Mutation Rate, Spectrum and Heteroplasmy in Caenorhabditis elegans Spontaneous Mutation Accumulation Lines of Differing Population Size - Anke Konrad et al. (MBE)
Mar 20 16:00Enzyme Efficiency but Not Thermostability Drives Cefotaxime Resistance Evolution in TEM-1 β-Lactamase - Jennifer L. Knies, Fei Cai, Daniel M. Weinreich (MBE)
Mar 20 16:00Mutation Supply and Relative Fitness Shape the Genotypes of Ciprofloxacin-Resistant Escherichia coli - Douglas L. Huseby et al. (MBE)
Mar 20 16:00Recurrent Gene Duplication Leads to Diverse Repertoires of Centromeric Histones in Drosophila Species - Lisa E. Kursel, Harmit S. Malik (MBE)
Mar 20 12:00Origin and evolutionary alteration of the mitochondrial import system in eukaryotic lineages. - Yoshinori Fukasawa, Toshiyuki Oda, Kentaro Tomii, Kenichiro Imai (MBE)
Mar 20 08:00Convergence of Domain Architecture, Structure, and Ligand Affinity in Animal and Plant RNA-Binding Proteins - Raquel Dias, Austin Manny, Oralia Kolaczkowski, Bryan Kolaczkowski (MBE)
Mar 20 08:00Inference of epistatic effects leading to entrenchment and drug resistance in HIV-1 protease - William F. Flynn, Allan Haldane, Bruce E. Torbett, Ronald M. Levy (MBE)
Mar 16 20:00Selection in Europeans on fatty acid desaturases associated with dietary changes - Matthew T. Buckley et al. (MBE)
Mar 16 12:00Organellar genomes from a ∼5,000 years old archaeological maize sample are closely related to NB genotype - Bernardo Pérez-Zamorano et al. (GBE)
Mar 16 08:00The multipartite mitochondrial genome of Enteromyxum leei (Myxozoa): eight fast evolving megacircles - Dayana Yahalomi et al. (MBE)
Mar 15 12:00Centromere destiny in dicentric chromosomes: New insights from the evolution of human chromosome 2 ancestral centromeric region - Giorgia Chiatante et al. (MBE)
Mar 15 12:00Convergent Balancing Selection on the Mu-Opioid Receptor in Primates - Carolyn G. Sweeney et al. (MBE)
Mar 13 16:00Osmolality/salinity-responsive enhancers (OSREs) control induction of osmoprotective genes in euryhaline fish - Xiaodan Wang, Dietmar Kültz (PNAS)
Mar 13 16:00Storage and release of hydrogen cyanide in a chelicerate (Oribatula tibialis) - Adrian Brückner et al. (PNAS)
Mar 13 12:00Expressed Structurally-stable Inverted Duplicates in Mammalian Genomes as Functional Noncoding Elements - Zhen-Xia Chen et al. (GBE)
Mar 13 08:00The Influence of HIV on The Evolution of Mycobacterium tuberculosis - Anastasia Koch et al. (MBE)
Mar 13 08:00The role of DAF-21/Hsp90 in mouth-form plasticity in Pristionchus pacificus - Bogdan Sieriebriennikov, Gabriel V. Markov, Hanh Witte, Ralf J. Sommer (MBE)
Mar 13 08:00Probing the evolutionary history of human bitter taste receptor pseudogenes by restoring their function - Davide Risso et al. (MBE)
Mar 11 08:00Phylogenetics of lophotrochozoan bHLH genes and the evolution of lineage-specific gene duplicates - Yongbo Bao, Fei Xu, Sebastian M. Shimeld (GBE)
Mar 11 08:00A nonsynonymous SNP catalog of Mycobacterium tuberculosis virulence genes and its use for detecting new potentially virulent sublineages - N.E. Mikheecheva, M.V. Zaychikova, A.V. Melerzanov, V.N. Danilenko (GBE)
Mar 11 08:00Non-replicative RNA Recombination of an Animal Plus-Strand RNA Virus in the Absence of Efficient Translation of Viral Proteins - Maximiliane Kleine Büning et al. (GBE)
Mar 11 08:00A Consensus Method for Ancestral Recombination Graphs - Mary K. Kuhner, Jon Yamato (JME)
Mar 10 11:37Experimental Evolution of Escherichia coli Harboring an Ancient Translation Protein - Betül Kacar, Xueliang Ge, Suparna Sanyal, Eric A. Gaucher (JME)
Mar 10 11:22The evolution and functional diversification of the deubiquitinating enzyme superfamily - Caitlyn Vlasschaert, David Cook, Xuhua Xia, Douglas A. Gray (GBE)
Mar 10 11:22Population structure of multidrug resistant Klebsiella oxytoca within hospitals across the UK and Ireland identifies sharing of virulence and resistance genes with K. pneumoniae - Danesh Moradigaravand, Veronique Martin, Sharon J. Peacock, Julian Parkhill (GBE)
Mar 10 11:22Biological species are universal across Life's domains - Louis-Marie Bobay, Howard Ochman (GBE)
Mar 10 11:22Phytophthora megakarya and P. palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms. - Shahin S. Ali et al. (GBE)
Mar 10 11:22The landscape of extreme genomic variation in the highly adaptable Atlantic killifish - Noah M. Reid et al. (GBE)
Mar 10 11:22Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses - José S. L. Patané et al. (GBE)
Mar 10 11:22A sweet story: Bean pod mottle virus transmission dynamics by Mexican bean beetles (Epilachna varivestis) - Charlotte M. Smith, Cassidy R. Gedling, Kiana F. Wiebe, Bryan J. Cassone (GBE)
Mar 10 11:22An annotated draft genome for Radix auricularia (Gastropoda, Mollusca) - Tilman Schell et al. (GBE)
Mar 10 11:22The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens - Mark Derbyshire et al. (GBE)
Mar 10 11:22Evolutionary Genomics of an Ancient Prophage of the Order Sphingomonadales - Vandana Viswanathan et al. (GBE)
Mar 10 11:22Mating changes sexually dimorphic gene expression in the seed beetle Callosobruchus maculatus - E. Immonen, A. Sayadi, H. Bayram, G. Arnqvist (GBE)
Mar 10 11:22Modular organization of residue-level contacts shape the selection pressure on individual amino acid sites of ribosomal proteins - Saurav Mallik, Sudip Kundu (GBE)
Mar 10 11:22Evolutionary dynamics of regulatory changes underlying gene expression divergence among Saccharomyces species - Brian P. H. Metzger, Patricia J. Wittkopp, Joseph. D. Coolon (GBE)
Mar 10 11:22Phylogenomic Insights into Mouse Evolution Using a Pseudoreference Approach - Brice A. J. Sarver et al. (GBE)
Mar 10 11:22Allele-specific expression analysis does not support sex chromosome inactivation on the chicken Z chromosome - Qiong Wang et al. (GBE)
Mar 10 11:22Host genotype and microbiota contribute asymmetrically to transcriptional variation in the threespine stickleback gut - Clayton M. Small et al. (GBE)
Mar 10 11:22Recombination-mediated host-adaptation by avian Staphylococcus aureus - Susan Murray et al. (GBE)
Mar 10 11:22Evidence of a conserved molecular response to selection for increased brain size in primates - Amy M. Boddy et al. (GBE)
Mar 10 11:22The Chlamydia suis genome exhibits high levels of diversity, plasticity and mobile antibiotic resistance: comparative genomics of a recent livestock cohort shows influence of treatment regimes - Helena M.B. Seth-Smith et al. (GBE)
Mar 10 11:22Cross-species Genome-wide Identification of Evolutionary Conserved MicroProteins - Daniel Straub, Stephan Wenkel (GBE)
Mar 10 11:22Duplications and positive selection drive the evolution of parasitism associated gene families in the nematode Strongyloides papillosus - Praveen Baskaran, Tegegn G. Jaleta, Adrian Streit, Christian Rödelsperger (GBE)
Mar 10 11:22Conserved patterns of sex chromosome dosage compensation in the Lepidoptera (WZ/ZZ): insights from a moth neo-Z chromosome - Liuqi Gu, James R. Walters, Douglas C. Knipple (GBE)
Mar 10 11:22Rapid evolution of microRNA loci in the brown algae - J. Mark Cock et al. (GBE)
Mar 10 11:22Evolutionary dynamics of pathoadaptation revealed by three independent acquisitions of the VirB/D4 type IV secretion system in Bartonella - Alexander Harms et al. (GBE)
Mar 10 11:22RNA editing during sexual development occurs in distantly related filamentous ascomycetes - Ines Teichert, Tim Dahlmann, Ulrich Kück, Minou Nowrousian (GBE)
Mar 10 11:22Burrowers from the past: mitochondrial signatures of Ordovician bivalve infaunalization - Federico Plazzi, Guglielmo Puccio, Marco Passamonti (GBE)
Mar 10 11:22Genome-wide estimates of transposable element insertion and deletion rates in Drosophila melanogaster - Jeffrey R. Adrion et al. (GBE)
Mar 10 11:22It remains unknown whether filaggrin gene mutations evolved to increase cutaneous synthesis of vitamin D - Jacob P. Thyssen, M.D., Peter M. Elias, M.D. (GBE)
Mar 10 11:21Deleterious Variants in Asian Rice and the Potential Cost of Domestication - Qingpo Liu, Yongfeng Zhou, Peter L. Morrell, Brandon S. Gaut (MBE)
Mar 10 11:21Rapid Expansion of Immune-Related Gene Families in the House Fly, Musca domestica - Timothy B. Sackton, Brian P. Lazzaro, Andrew G. Clark (MBE)
Mar 10 11:21No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution - Tomislav Domazet-Lošo et al. (MBE)
Mar 10 11:21Genomics of Parallel Experimental Evolution in Drosophila - J.L. Graves et al. (MBE)
Mar 10 11:21Antibiotic Cycling and Antibiotic Mixing: which one best mitigates antibiotic resistance? - R. E. Beardmore, R. Pena-Miller, F. Gori, J. Iredell (MBE)
Mar 10 11:21Down-Regulation of EPAS1 Transcription and Genetic Adaptation of Tibetans to High-Altitude Hypoxia - Yi Peng et al. (MBE)
Mar 10 11:21Origin and evolution of the sponge aggregation factor gene family - Laura F. Grice et al. (MBE)
Mar 10 11:21The Goddard and Saturn Genes Are Essential for Drosophila Male Fertility and May Have Arisen De Novo - Anna M. Gubala et al. (MBE)
Mar 10 11:21Transposable Element-Mediated Balancing Selection at Hsp90 Underlies Embryo Developmental Variation - Bing Chen et al. (MBE)
Mar 10 11:21Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution - Rosina Savisaar, Laurence D. Hurst (MBE)
Mar 10 11:21Evolution of Local Mutation Rate and Its Determinants - Nadezhda V. Terekhanova, Vladimir B. Seplyarskiy, Ruslan A. Soldatov, Georgii A. Bazykin (MBE)
Mar 10 11:21Purifying and Positive Selection Influence Patterns of Gene Loss and Gene Expression in the Evolution of a Plant Sex Chromosome System - Daisy Crowson, Spencer C.H. Barrett, Stephen I. Wright (MBE)
Mar 10 11:21Changes in lipidome composition during brain development in humans, chimpanzees, and macaque monkeys - Qian Li et al. (MBE)
Mar 10 11:21Mitogenome Diversity in Sardinians: a Genetic Window onto an Island's Past - Anna Olivieri et al. (MBE)
Mar 10 11:21Efficient inference of recent and ancestral recombination within bacterial populations - Rafal Mostowy et al. (MBE)
Mar 10 11:21The Demographic and Adaptive History of the African Green Monkey - Susanne P. Pfeifer (MBE)
Mar 10 11:21Stability-mediated epistasis restricts accessible mutational pathways in the functional evolution of avian hemoglobin - Amit Kumar et al. (MBE)
Mar 10 11:21Differential Gene Expression in the Human Brain Is Associated with Conserved, but not Accelerated, Noncoding Sequences - Kyle A. Meyer, Tomas Marques-Bonet, Nenad Sestan (MBE)
Mar 10 11:21Population genomics of Paramecium species - Parul Johri et al. (MBE)
Mar 10 11:21How long does Wolbachia remain on board? - Marc Bailly-Bechet et al. (MBE)
Mar 10 11:21Phylodynamic inference across epidemic scales - Erik M. Volz, Ethan Romero-Severson, Thomas Leitner (MBE)
Mar 10 11:21Pollutants and insecticides drive local adaptation in African malaria mosquitoes - Colince Kamdem, Caroline Fouet, Stephanie Gamez, Bradley J. White (MBE)
Mar 10 11:21Frozen in Time: The History of Proteins - Nicholas A. Kovacs, Anton S. Petrov, Kathryn A. Lanier, Loren Dean Williams (MBE)
Mar 10 11:21Structural History of Human SRGAP2 Proteins - Michael Sporny et al. (MBE)
Mar 10 11:21Identification of Highly Divergent Diatom-Derived Chloroplasts in Dinoflagellates, Including a Description of Durinskia kwazulunatalensis sp. nov. (Peridiniales, Dinophyceae) - Norico Yamada, Stuart D. Sym, Takeo Horiguchi (MBE)
Mar 10 11:21New statistical criteria detect phylogenetic bias caused by compositional heterogeneity - David A. Duchêne, Sebastian Duchêne, Simon Y. W. Ho (MBE)
Mar 10 11:21Deciphering the Routes of invasion of Drosophila suzukii by Means of ABC Random Forest - Antoine Fraimout et al. (MBE)
Mar 10 11:21Detection of pathways affected by positive selection in primate lineages ancestral to humans - J.T. Daub et al. (MBE)
Mar 10 11:21The impact of native state switching on protein sequence evolution - Avital Sharir-Ivry, Yu Xia (MBE)
Mar 10 11:21Bayesian Analysis of Evolutionary Divergence with Genomic Data Under Diverse Demographic Models - Yujin Chung, Jody Hey (MBE)
Mar 10 11:21Structure of the transcriptional regulatory network correlates with regulatory divergence in Drosophila - Bing Yang, Patricia J. Wittkopp (MBE)
Mar 10 11:21Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants - Amanda R. De La Torre, Zhen Li, Yves Van de Peer, Pär K. Ingvarsson (MBE)
Mar 10 11:21Recurrent gene duplication leads to diverse repertoires of centromeric histones in Drosophila species - Lisa E. Kursel, Harmit S. Malik (MBE)
Mar 10 11:21Convergence of domain architecture, structure and ligand affinity in animal and plant RNA-binding proteins - Raquel Dias, Austin Manny, Oralia Kolaczkowski, Bryan Kolaczkowski (MBE)
Mar 10 11:21BuddySuite: Command-line toolkits for manipulating sequences, alignments, and phylogenetic trees - Stephen R. Bond, Karl E. Keat, Sofia N. Barreira, Andreas D. Baxevanis (MBE)
Mar 10 11:21Genetic diversity and the efficacy of purifying selection across plant and animal species - Jun Chen, Sylvain Glemin, Martin Lascoux (MBE)
Mar 10 11:21Comparative sperm proteomics in mouse species with divergent mating systems - Alberto Vicens et al. (MBE)
Mar 10 11:21Single cell transcriptomics, mega-phylogeny and the genetic basis of morphological innovations in Rhizaria - Anders K. Krabberùd et al. (MBE)
Mar 10 11:21The evolutionary dynamics of orthologs that shift in gene body methylation between Arabidopsis species - Shohei Takuno, Danelle K. Seymour, Brandon S. Gaut (MBE)
Mar 10 11:21Evolution of the genome 3D organization: comparison of fused and segregated globin gene clusters. - Anastasia P. Kovina et al. (MBE)
Mar 10 11:20Stepwise evolution of a buried inhibitor peptide over 45 million years - Achala S. Jayasena et al. (MBE)
Mar 9 20:00Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae) - Helena Farkašová et al. (PNAS)
Mar 7 16:00Massive increase in visual range preceded the origin of terrestrial vertebrates - Malcolm A. MacIver, Lars Schmitz, Ugurcan Mugan, Todd D. Murphey, Curtis D. Mobley (PNAS)
Mar 6 16:00The presumed ginkgophyte Umaltolepis has seed-bearing structures resembling those of Peltaspermales and Umkomasiales - Fabiany Herrera et al. (PNAS)
Mar 6 16:00Multiple origins of viral capsid proteins from cellular ancestors - Mart Krupovic, Eugene V. Koonin (PNAS)
Mar 6 16:00Unified reduction principle for the evolution of mutation, migration, and recombination - Lee Altenberg, Uri Liberman, Marcus W. Feldman (PNAS)
Feb 27 12:00The Origin of Life: Models and Data - (JME)