This site is managed by Brian Golding. Note that entries are
retained for only thirty days. Currently only
GBE,
JME,
MBE,
and PNAS (selected articles),
are provided.
| Jun 21 16:00 | Correction for Chihoub et al., The evolution of robustness and fragility during long-term bacterial adaptation - (PNAS)
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| Jun 21 14:03 | Chromosomal inversions and their potential impact on the evolution of arboviral vector Aedes aegypti
by Jiangtao Liang and others
(GBE)
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| Jun 19 20:00 | Homoploid hybridization adds clarity to the origins of octoploid strawberries - Zhen Fan, et al. (PNAS)
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| Jun 19 17:03 | The heterogametic transition in European Bufo toads switches the sex-linkage of key vertebrate sex-determination genes and associates with a large sex-chromosome-effect
by Christophe Dufresnes and others
(MBE)
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| Jun 18 20:00 | An ancient origin of the naked grains of maize - Regina A. , et al. (PNAS)
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| Jun 17 16:03 | Collective artificial intelligence and evolutionary dynamics - Udari Madhushani , et al. (PNAS)
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| Jun 17 16:03 | European mammal turnover driven by a global rapid warming event preceding the Paleocene-Eocene Thermal Maximum - Rodolphe Tabuce, et al. (PNAS)
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| Jun 17 16:03 | Deep mechanism design: Learning social and economic policies for human benefit - Andrea Tacchetti, et al. (PNAS)
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| Jun 17 16:03 | Collective cooperative intelligence - Wolfram Barfuss, et al. (PNAS)
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| Jun 17 16:03 | Tabula rasa agents display emergent in-group behavior - Raphael Köster, et al. (PNAS)
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| Jun 17 16:03 | Humans program artificial delegates to accurately solve collective-risk dilemmas but lack precision - Inês Terrucha, et al. (PNAS)
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| Jun 17 16:03 | Unilateral incentive alignment in two-agent stochastic games - Alex Mc, et al. (PNAS)
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| Jun 17 16:03 | Picking strategies in games of cooperation - Julian García, et al. (PNAS)
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| Jun 16 14:03 | Impact of Phylogenetic Method Choice on Indel Analyses in HIV-1 Subtype B
by Micka=EBl Seppey and others
(GBE)
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| Jun 16 14:03 | Mitonuclear coevolution in bumblebees (Bombus): genomic signatures and its role in climatic niche adaptation
by Leonardo Tresoldi Gon=E7alves and others
(GBE)
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| Jun 15 08:00 | Correction for Manthey et al., Rapid growth and the evolution of complete metamorphosis in insects - (PNAS)
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| Jun 14 14:03 | High gene expression predicts extremely low segregation of deleterious mutations in large penguin populations
by Emiliano Trucchi and others
(MBE)
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| Jun 14 14:03 | Dynamic Birth and Death of Argonaute Gene Family Functional Repertoire Across Caenorhabditis Nematodes
by Daniel D Fusca and others
(GBE)
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| Jun 13 17:03 | Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function
by Sergi Valverde and others
(MBE)
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| Jun 13 17:03 | Quantifying the evolution of SNPs that affect RNA secondary structure in Arabidopsis thaliana genes
by Galen T Martin and others
(MBE)
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| Jun 13 16:00 | Macroevolutionary analysis of polysynthesis shows that language complexity is more likely to evolve in small, isolated populations - Lindell Bromham, et al. (PNAS)
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| Jun 13 16:00 | Hamiltonella symbionts benefit whitefly fertilization by regulating the maternal protein Tudor-mediated piRNA pathway - Xiang Sun, et al. (PNAS)
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| Jun 13 16:00 | Whole-genome duplication leads to significant but inconsistent changes in climatic niche - Patrick G. , et al. (PNAS)
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| Jun 13 16:00 | Biparental inheritance of germline-specific chromosomes in the sea lamprey and their roles in oocytes - Vladimir A. , et al. (PNAS)
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| Jun 12 17:03 | Changes in Evolutionary Developmental Control Points in the Amniote Limb May Explain Hyperphalangy
by Merijn A G de Bakker and others
(MBE)
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| Jun 12 17:03 | Feature architecture-aware ortholog search with fDOG reveals the distribution of plant cell wall-degrading enzymes across life
by Vinh Tran and others
(MBE)
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| Jun 12 17:03 | Widespread genetic signals of visual system adaptation in deepwater cichlid fishes
by Julia I Camacho Garc=EDa and others
(MBE)
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| Jun 12 17:03 | The Data are Insufficient to Confidently Root the SARS-CoV-2 Phylogenetic Tree
by Jesse D Bloom and Brandon Gaut
(MBE)
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| Jun 12 17:03 | A Critical Reexamination of Recovered SARS-CoV-2 Sequencing Data
by Florence D=E9barre and others
(MBE)
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| Jun 12 17:03 | The Early Evolution of Tudor Genes in Holozoa and How Their Distribution Was Influenced by Life History Traits in Metazoa
by Giovanni Piccinini and others
(GBE)
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| Jun 12 17:03 | Exploiting Viral DNA Genomes to Explore the Dispersal History of African Swine Fever Genotype II Lineages in Europe
by Fabiana G=E1mbaro and others
(GBE)
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| Jun 12 12:00 | Evolution of gene order in prokaryotes is driven primarily by gene gain and loss - Shelly Brezner, et al. (PNAS)
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| Jun 11 08:00 | Deep origins, distinct adaptations, and species-level status indicated for a glacial relict seal - Ari Löytynoja, et al. (PNAS)
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| Jun 10 17:03 | Spatio-temporal tracking of three novel transposable element invasions in Drosophila melanogaster over the last 30 years
by Riccardo Pianezza and others
(MBE)
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| Jun 10 08:00 | No mass extinction for South American mammals at the Eocene-Oligocene transition - Laurie R. , et al. (PNAS)
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| Jun 10 08:00 | Eradication efforts catalyze rapid evolution in an invasive predatory fish - Liam J. , et al. (PNAS)
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| Jun 9 14:03 | Pervasive divergence in protein thermostability is mediated by both structural changes and cellular environments
by Nilima Walunjkar and others
(MBE)
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| Jun 9 14:03 | A general substitution matrix for structural phylogenetics.
by Sriram G Garg and others
(MBE)
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| Jun 9 14:03 | Genome structural variants shape adaptive success of an invasive urban malaria vector Anopheles stephensi
by Alejandra Samano and others
(MBE)
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| Jun 9 14:03 | Connectivity and adaptation patterns of the deep-sea ground-forming sponge Geodia hentscheli across its entire distribution
by Sergi Taboada and others
(MBE)
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| Jun 9 14:03 | Tripartite loops reverse antibiotic resistance
by Farhan R Chowdhury and others
(MBE)
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| Jun 9 14:03 | MEGA-GPT: Artificial Intelligence Guidance and Building Analytical Protocols Using MEGA Software
by John B Allard and others
(MBE)
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| Jun 9 14:03 | Highlight: MEGA into the New Generation of Computational Genetics
by Pedro Andrade
(MBE)
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| Jun 9 14:03 | Divergent plastid genomes in the deepest-branching apicomplexan parasites
by Gordon Lax and others
(GBE)
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| Jun 9 14:03 | Structural Enzymology, Phylogenetics, Differentiation, and Symbolic Reflexivity at the Dawn of Biology
by Charles W Carter, et al.
(GBE)
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| Jun 9 14:03 | RNA-sequencing Analysis of Hybrid Females Reveals a Dominance of Expression of Alleles From Outcrossing Species Over Those From Selfing Species
by Yanwen Shao and others
(GBE)
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| Jun 8 17:03 | Impact of the Zinc Antiviral Protein on the genomic composition of RNA viruses infecting vertebrates
by Diego Sim=F3n and others
(MBE)
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| Jun 8 17:03 | Exploring large protein sequence space through homology- and representation-based hierarchical clustering
by John Z Chen and others
(MBE)
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| Jun 8 17:03 | Genetic formation of Neolithic Hongshan people and demic expansion of Hongshan culture inferred from ancient human genomes
by Rui Wang and others
(MBE)
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| Jun 8 17:03 | Evolution of functional genomic diversity during a bottleneck
by Fl=E1via Schlichta and others
(GBE)
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| Jun 8 17:03 | Chromosome-level Assemblies of Three Candidatus Liberibacter solanacearum Vectors: Dyspersa apicalis (F=F6rster, 1848),Dyspersa pallida (Burckhardt, 1986), and Trioza urticae (Linnaeus, 1758) (Hemiptera: Psylloidea)
by Thomas Heaven and others
(GBE)
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| Jun 7 17:03 | Origin and evolution of bacterial periplasmic force transducers
by Daniel P Williams-Jones and others
(MBE)
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| Jun 7 17:03 | Genome mountaineering: expanding horizons of the three-dimensional genome for the intrepid evolutionary adventurer
by Ava Mackay-Smith and others
(GBE)
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| Jun 7 17:03 | Comparative genomics reveals intra and inter species variation in the pathogenic fungus Batrachochytrium dendrobatidis
by Mark N Yacoub and others
(GBE)
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| Jun 7 17:03 | Comparative Analysis of Transposable Element Evolution in Crustaceans
by Xiangjian Zeng and others
(GBE)
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| Jun 6 20:03 | Deciphering the code of viral-host adaptation through Maximum-Entropy Nucleotide Bias models
by Andrea Di Gioacchino and others
(MBE)
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| Jun 6 20:03 | Bayesian phylodynamic inference of multi-type population trajectories using genomic data
by Timothy G Vaughan and others
(MBE)
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| Jun 5 17:03 | Shikimate Kinase-Like 1 Participates in an Ancient and Conserved Role Contributing to Chloroplast Biogenesis in Land Plants
by Michael Kanaris and others
(MBE)
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| Jun 5 17:03 | HGTs are not SPRs: In the presence of ghost lineages, series of Horizontal Gene Transfers do not result in series of Subtree Pruning and Regrafting
by Eric Tannier and others
(MBE)
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| Jun 5 17:03 | Rates of evolution of developmental changes in gene expression in Sordariomycetes
by Yen-Wen Wang and others
(MBE)
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| Jun 5 17:03 | Amino acid patterns in independent lineages of vocal learning and other birds give insights into convergent evolution
by Chul Lee and others
(GBE)
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| Jun 5 17:03 | Unicore Enables Scalable and Accurate Phylogenetic Reconstruction with Structural Core Genes
by Dongwook Kim and others
(GBE)
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| Jun 5 17:03 | Highlight: =93Jumping Genes=94 Caught in an Aging Merry-Go-Round
by Pedro Andrade and others
(GBE)
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| Jun 4 20:00 | Parallel sensory compensation following independent subterranean colonization by groundwater salamanders (Eurycea) - Ruben U. , et al. (PNAS)
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| Jun 4 20:00 | Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts - Kyle T. , et al. (PNAS)
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| Jun 4 20:00 | Population sequencing for phylogenetic diversity and transmission analyses - Talima Pearson, et al. (PNAS)
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| Jun 4 20:00 | Natural dispersal is better than translocation for reducing risks of inbreeding depression in eastern black rhinoceros (Diceros bicornis michaeli) - Ronald. V. , et al. (PNAS)
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| Jun 3 17:03 | Elucidating the molecular mechanisms of sex ratio distortion mediated by cytoplasmic symbionts
by Richard Cordaux and others
(GBE)
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| Jun 3 16:00 | Updated fossil analyses reveal critical insights into the origins of monotreme lifestyles - Megan R. , et al. (PNAS)
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| Jun 2 17:03 | Conservation evolutionary biology: a unified framework connecting the past, present, and future of biodiversity conservation
by Yisi Hu and others
(MBE)
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| Jun 2 17:03 | Accelerated pseudogenization in the ancient endosymbionts of giant scale insects
by Jinyeong Choi and others
(MBE)
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| May 31 14:03 | The Role of Alternative Splicing in Marine-freshwater Divergence in Threespine Stickleback
by Carlos E Rodr=EDguez-Ram=EDrez and others
(GBE)
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| May 31 08:00 | Phylogenomics reveals the slow-burning fuse of diatom evolution - Andrew J. , et al. (PNAS)
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| May 31 08:00 | Independent transitions to fully planktonic life cycles shaped the global distribution of medusozoans in the epipelagic zone - Manon Boosten, et al. (PNAS)
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| May 30 17:03 | Multiple Horizontal Transfers of Immune Genes Between Distantly Related Teleost Fishes
by Maxime Policarpo and others
(MBE)
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| May 30 17:03 | ShiNyP: Unlocking SNP-Based Population Genetics=97An AI-Assisted Platform for Rapid and Interactive Visual Exploration
by Yen-Hsiang Huang and others
(MBE)
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| May 30 17:03 | Accounting for chimerism in demographic inference: reconstructing the history of common marmosets (Callithrix jacchus) from high-quality, whole-genome, population-level data
by Vivak Soni and others
(MBE)
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| May 30 17:03 | When the Past Fades: Detecting Phylogenetic Signal with SatuTe
by Cassius Manuel and others
(MBE)
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| May 30 17:03 | Quantifying Transcriptome Turnover on Phylogenies by Modeling Gene Expression as a Binary Trait
by Ammon Thompson and others
(MBE)
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| May 30 17:03 | Genome-wide analyses of human respiratory syncytial viruses provide insights on evolutionary dynamics
by Lu-lu Chen and others
(GBE)
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| May 30 17:03 | Temporal Dynamics of Gene Expression During Metamorphosis in Two Distant Drosophila Species
by A M Ozerova and others
(GBE)
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| May 29 14:03 | Evolutionary Genomics Unravels the Responses and Adaptation to Climate Change in a Key Alpine Forest Tree Species
by Zhiqin Long and others
(MBE)
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| May 29 14:03 | Relaxed purifying selection is associated with an accumulation of transposable elements in flies
by Vincent M=E9rel and others
(MBE)
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| May 29 14:03 | Nonhypermutator Cancers Access Driver Mutations Through Reversals in Germline Mutational Bias
by Marwa Z Tuffaha and others
(MBE)
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| May 29 14:03 | Genomics Sheds New Light on the Ancestral Bilaterian Opsin Repertoire and Suggests Rhabdomeric Phototransduction in Xenacoelomorpha
by Samuel Abalde and others
(GBE)
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| May 28 16:00 | Synthesizing decades of research into one tree for birds - Josefin Stillera, et al. (PNAS)
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| May 28 16:00 | Evolution of the essential gene MN1 during the macroevolutionary transition toward patterning the vertebrate hindbrain - Elio Escamilla-, et al. (PNAS)
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| May 27 14:03 | GBRAP: A Comprehensive Database and Tool for Exploring Genomic Diversity Across All Domains of Life
by Sachithra Kalhari Yaddehige and others
(MBE)
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| May 27 14:03 | The fire ant social chromosome exerts a major influence on genome regulation
by Beryl M Jones and others
(MBE)
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| May 27 14:03 | Methylomes reveal recent evolutionary changes in populations of two plant species
by Kevin Korfmann and others
(GBE)
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| May 27 14:03 | Alternative mutational architectures producing identical M-matrices can lead to different patterns of evolutionary divergence
by Daohan Jiang and others
(GBE)
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| May 26 14:03 | Parameter Scaling in Population Genetics Simulations May Introduce Unintended Background Selection: Considerations for Scaled Simulation Design
by Tessa Ferrari and others
(GBE)
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| May 26 14:03 | Multiple Retrotransposon-mediated NF-YA Gene Duplication Events Recurred in Diverse Groups of Mammals at Different Ancestry Levels
by Alberto Gallo and others
(GBE)
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| May 25 17:03 | The Genome of Apera spica-venti, a major grass weed
by John Lemas and others
(GBE)
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| May 24 20:00 | Complexity myths and the misappropriation of evolutionary theory - Michael Lyncha, et al. (PNAS)
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