Forthcoming Articles

This site is managed by Brian Golding. Note that entries are retained for only thirty days. Currently only GBE, JME, MBE, and PNAS (selected articles), are provided.

Other online access

- Bioinformatics - Biometrika - Evolution - Evol Applications
- GBE - Genome Research - Genetics - J.Bioinfo. & Comp. Biol.
- J.Mol.Evol. - MBE - Mol. Phylogenetics & Evol - Nature
- Nucl. Acids Res. - PNAS - Science - Systematic Biology

Articles added in the last thirty days:

Nov 13 20:00Dissecting the transcriptomic basis of phenotypic evolution in an aquatic keystone grazer - Dagmar Frisch, Dörthe Becker, Marcin W Wojewodzic (MBE)
Nov 13 12:00Somatic mutations and genome stability maintenance in clonal coral colonies - Elora H López, Stephen R Palumbi (MBE)
Nov 12 20:00Sexually antagonistic selection promotes genetic divergence between males and females in an ant - Pierre-André Eyer, Alexander J. Blumenfeld, Edward L. Vargo (PNAS)
Nov 12 12:00Living Trees: High-Quality Reproducible and Reusable Construction of Bacterial Phylogenetic Trees - Dalong Hu, Bin Liu, Lei Wang, Peter R Reeves (MBE)
Nov 12 08:00Genome assembly of the common pheasant Phasianus colchicus, a model for speciation and ecological genomics - Yang Liu et al. (GBE)
Nov 11 20:00Introgression drives repeated evolution of winter coat color polymorphism in hares - Iwona Giska et al. (PNAS)
Nov 11 20:00Hidden resources in the Escherichia coli genome restore PLP synthesis and robust growth after deletion of the essential gene pdxB - Juhan Kim et al. (PNAS)
Nov 11 20:00Pollination of Cretaceous flowers - Tong Bao, Bo Wang, Jianguo Li, David Dilcher (PNAS)
Nov 10 08:00Genome-Wide Genotype-Expression Relationships Reveal Both Copy Number and Single Nucleotide Differentiation Contribute to Differential Gene Expression between Stickleback Ecotypes - Yun Huang et al. (GBE)
Nov 9 12:00Reprogramming of retrotransposon activity during speciation of the genus Citrus - Carles Borredá et al. (GBE)
Nov 9 12:00Developmental systems drift and the drivers of sex chromosome evolution - Caroline M S Cauret et al. (MBE)
Nov 9 12:00Ancient DNA reconstructs the genetic legacies of pre-contact Puerto Rico communities - Maria A Nieves-Colón et al. (MBE)
Nov 9 12:00Optimizing Phylogenomics with Rapidly Evolving Long Exons: Comparison with Anchored Hybrid Enrichment and Ultraconserved Elements - Benjamin R Karin, Tony Gamble, Todd R Jackman (MBE)
Nov 8 12:00The Rhododendron genome and chromosomal organization provide insight into shared whole genome duplications across the heath family (Ericaceae) - Valerie L Soza et al. (GBE)
Nov 8 12:00Diet and adaptive evolution of alanine-glyoxylate aminotransferase mitochondrial targeting in birds - Bing-Jun Wang et al. (MBE)
Nov 8 12:00Phylogenomics identifies an ancestral burst of gene duplications predating the diversification of aphidomorpha - Irene Julca et al. (MBE)
Nov 8 08:00Sex-Ratio Meiotic Drive Shapes the Evolution of the Y Chromosome in Drosophila simulans - Quentin Helleu et al. (MBE)
Nov 7 12:00Ancient introgression between two ape malaria parasite species - Lindsey J Plenderleith et al. (GBE)
Nov 7 12:00Unbiased estimation of linkage disequilibrium from unphased data - Aaron P Ragsdale, Simon Gravel (MBE)
Nov 7 12:00Plasmodium vivax Malaria viewed through the lens of an eradicated European strain - Lucy van Dorp et al. (MBE)
Nov 7 12:00A burst of genetic innovation in Drosophila actin-related proteins for testis-specific function - Courtney M Schroeder et al. (MBE)
Nov 6 12:00Limited DNA repair gene repertoire in Ascomycete yeast revealed by comparative genomics - Shira Milo, Reut Harari Misgav, Einat Hazkani-Covo, Shay Covo (GBE)
Nov 6 12:00Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina - Blastocystis Stramenopile Lineage - Naoji Yubuki et al. (MBE)
Nov 6 12:00Divergent selection and primary gene flow shape incipient speciation of a riparian tree on Hawaii Island - Jae Young Choi, Michael Purugganan, Elizabeth A Stacy (MBE)
Nov 5 12:00The effect of population bottleneck size and selective regime on genetic diversity and evolvability in bacteria - Tanita Wein, Tal Dagan (GBE)
Nov 5 12:00A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome - Srinidhi Varadharajan et al. (GBE)
Nov 5 12:00Phylotranscriptomic analyses reveal asymmetrical gene duplication dynamics and signatures of ancient polyploidy in mints - Grant T Godden, Taliesin J Kinser, Pamela S Soltis, Douglas E Soltis (GBE)
Nov 5 12:00Genomic resources for darters (Percidae: Etheostominae) provide insight into postzygotic barriers implicated in speciation - Rachel L Moran, Julian M Catchen, Rebecca C Fuller (MBE)
Nov 5 12:00Genotyping and de novo discovery of allelic variants at the Brassicaceae self-incompatibility locus from short read sequencing data - Mathieu Genete, Vincent Castric, Xavier Vekemans (MBE)
Nov 5 12:00On the Use of Information Criteria for Model Selection in Phylogenetics - Edward Susko, Andrew J Roger (MBE)
Nov 4 12:00Human and Nonhuman Primate Lineage-Specific Footprints in the Salivary Proteome - Supaporn Thamadilok et al. (MBE)
Oct 31 12:00Evolutionary analysis of bile acid-conjugating enzymes reveals a complex duplication and reciprocal loss history - Bogdan M Kirilenko et al. (GBE)
Oct 31 12:00Complete genome of the chitin-degrading bacterium, Paenibacillus xylanilyticus W4 - Weifang Liao, Pulin Liu, Weijie Liao, Lihong Miao (GBE)
Oct 31 12:00Protein Structural Information and Evolutionary Landscape by In Vitro Evolution - Marco Fantini et al. (MBE)
Oct 31 12:00Mitochondrial metagenomics reveals the ancient origin and phylodiversity of soil mites and provides a phylogeny of the Acari - Paula Arribas et al. (MBE)
Oct 30 12:00A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mixed-species transcriptome analyses - Erica Lasek-Nesselquist, Matthew D Johnson (GBE)
Oct 30 12:00Molecular diversification of the seminal fluid proteome in a recently diverged passerine species pair - Melissah Rowe et al. (MBE)
Oct 30 12:00Evolutionary analyses of base-pairing interactions in DNA and RNA secondary structures - Michael Golden et al. (MBE)
Oct 29 20:00treeio: an R package for phylogenetic tree input and output with richly annotated and associated data - Li-Gen Wang et al. (MBE)
Oct 29 12:00Gene composition as a potential barrier to large recombinations in the bacterial pathogen Klebsiella pneumoniae - Francesco Comandatore et al. (GBE)
Oct 29 12:00The Mitochondrial Genome of Eleusine indica and Characterization of Gene Content Within Poaceae - Nathan D Hall et al. (GBE)
Oct 29 08:00Hybridization increases population variation during adaptive radiation - Peter R. Grant, B. Rosemary Grant (PNAS)
Oct 29 08:00Expansion of a single transposable element family is associated with genome-size increase and radiation in the genus Hydra - Wai Yee Wong et al. (PNAS)
Oct 29 08:00Inexperienced preys know when to flee or to freeze in front of a threat - Marie Hébert, Elisabetta Versace, Giorgio Vallortigara (PNAS)
Oct 25 12:00Transcriptional mutagenesis prevents ribosomal DNA deterioration. The role of duplications and deletions - E S Colizzi, P Hogeweg (GBE)
Oct 25 12:00The amount of RNA editing sites in liverwort organellar genes is correlated with GC content and nuclear PPR protein diversity - Shanshan Dong et al. (GBE)
Oct 25 12:00Comparative genomics analysis reveals high levels of differential retrotransposition among primates from the Hominidae and the Cercopithecidae families - Wanxiangfu Tang, Ping Liang (GBE)
Oct 25 12:00Higher gene flow in sex-related chromosomes than in autosomes during fungal divergence - Fanny E Hartmann et al. (MBE)
Oct 25 12:00OxyR is a convergent target for mutations acquired during adaptation to oxidative stress-prone metabolic states - Amitesh Anand et al. (MBE)
Oct 25 12:00HLA heterozygote advantage against HIV-1 is driven by quantitative and qualitative differences in HLA allele-specific peptide presentation - Jatin Arora et al. (MBE)
Oct 25 12:00A Bayesian framework for inferring the influence of sequence context on point mutations - Guy Ling, Danielle Miller, Rasmus Nielsen, Adi Stern (MBE)
Oct 25 12:00DNA methylation profiles suggest intergenerational transfer of maternal effects - Clare J Venney, Oliver P Love, Ellen Jane Drown, Daniel D Heath (MBE)
Oct 24 12:00Convergent evolution of hydrogenosomes from mitochondria by gene transfer and loss - William H Lewis et al. (MBE)
Oct 23 08:00Genomic basis of convergent island phenotypes in boa constrictors - Daren C Card et al. (GBE)
Oct 22 20:00Loss of imprinting in human placentas is widespread, coordinated, and predicts birth phenotypes - Claudius Vincenz et al. (MBE)
Oct 22 08:00Middle Paleolithic complex technology and a Neandertal tar-backed tool from the Dutch North Sea - Marcel J. L. Th. Niekus et al. (PNAS)
Oct 22 08:00Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths - Akito Y. Kawahara et al. (PNAS)
Oct 22 08:00Rapid ocean acidification and protracted Earth system recovery followed the end-Cretaceous Chicxulub impact - Michael J. Henehan et al. (PNAS)
Oct 22 08:00Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio ω for Closely Related Species - Carina F Mugal et al. (MBE)
Oct 22 08:00Reliable confidence intervals for RelTime estimates of evolutionary divergence times - Qiqing Tao, Koichiro Tamura, Beatriz Mello, Sudhir Kumar (MBE)
Oct 22 08:00Asymmetric Distribution of Gene Trees Can Arise Under Purifying Selection if Differences in Population Size Exist - Chong He, Dan Liang, Peng Zhang (MBE)
Oct 21 12:00GingerRoot: a novel DNA transposon encoding integrase-related transposase in plants and animals - Stefan Cerbin, Ching Man Wai, Robert VanBuren, Ning Jiang (GBE)
Oct 21 12:00Living Trees: High Quality Reproducible and Reusable Construction of Bacterial Phylogenetic Trees - Dalong Hu, Bin Liu, Lei Wang, Peter R Reeves (MBE)
Oct 21 12:00Eutherian-specific gene TRIML2 attenuates inflammation in the evolution of placentation - Xuzhe Zhang, Mihaela Pavlicev, Helen N Jones, Louis J Muglia (MBE)
Oct 21 12:00Metagenome-Assembled Genomes Orchestra (MAGO): computational framework for high-quality production and large-scale evolutionary analysis of metagenome assembled genomes - Boštjan Murovec, Leon Deutsch, Blaz Stres (MBE)
Oct 21 12:00Purifying Selection in Corvids Is Less Efficient on Islands - Verena E Kutschera et al. (MBE)
Oct 17 12:00Unique Shine-Dalgarno sequences in Cyanobacteria and chloroplasts reveal evolutionary differences in their translation initiation - Yulong Wei, Xuhua Xia (GBE)
Oct 17 12:00A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona - Yutaka Satou et al. (GBE)
Oct 17 08:00Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter - Annabel C Beichman et al. (MBE)
Oct 16 12:00The Evolutionary History of Ephs and Ephrins: Toward Multicellular Organisms - Aida Arcas, David G Wilkinson, M Ángela Nieto (MBE)
Oct 16 12:00You Will Never Walk Alone: Codispersal of JC Polyomavirus with Human Populations - Diego Forni et al. (MBE)
Oct 16 08:00Evolution and unprecedented variants of the mitochondrial genetic code in a lineage of green algae - David Žihala, Marek Eliáš (GBE)
Oct 15 20:00Human and Non-Human Primate Lineage-Specific Footprints in the Salivary Proteome - Supaporn Thamadilok et al. (MBE)
Oct 15 12:00Evolution of sexual cooperation from sexual conflict - Maria R. Servedio, John M. Powers, Russell Lande, Trevor D. Price (PNAS)