Subject: Bioinformatics Table of Contents for 01 December 2017 ------=_Part_854810278.1512083479214 Content-Type: text/plain;charset=UTF-8 Oxford Academic [[HeaderAdvertisingToken]] https://silverchair.emailcampaigns.net/media/50/509735/OUP/oxford_logo.jpg?g72331686458 (http://click.skem1.com/click/l4mll-cu6ov2-66q6ox39/) [[BannerToken]] [[AlertTitleToken]] [[SelfServeTextToken]] [[FirstAdvertisingToken]] [[TOCMainToken]] Unsubscribe (http://click.skem1.com/form?l4mll--ply5-66q6ox39&sl=tq&t=5)Manage email alerts (http://click.skem1.com/click/l4mll-cu6ov3-66q6ox30/) Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK. The content of this email is protected by copyright. https://silverchair.emailcampaigns.net/media/50/509735/OUP/oxforde_university.jpg?g72331733632 (http://click.skem1.com/click/l4mll-cu6ov4-66q6ox31/) [[BottomAdvertisingToken]] This email is intended for bionet@evol.mcmaster.ca. ------=_Part_854810278.1512083479214 Content-Type: text/html;charset=UTF-8 Oxford Academic
 
 
 
oxford_logo.jpg
 
 
 
 
New issue alert
 
 
 
 
 
 
Bioinformatics  
Volume 33 Issue 23
 
01 December 2017
 
button-issue.png
 
DISCOVERY NOTES
 
 
 
 
GENE EXPRESSION
 
 
 
Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models 
 
Pedro Carmona-Sáez; Nieves Varela; María José Luque; Daniel Toro-Domínguez; Jordi Martorell-Marugan ...
 
 
Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment border= 
 
Trisevgeni Rapakoulia; Xin Gao; Yi Huang; Michiel de Hoon; Mariko Okada-Hatakeyama ...
 
 
ORIGINAL PAPERS
 
 
 
 
GENOME ANALYSIS
 
 
 
Detect differentially methylated regions using non-homogeneous hidden Markov model for methylation array data 
 
Linghao Shen ; Jun Zhu; Shuo-Yen Robert Li; Xiaodan Fan
 
 
Cloud-based interactive analytics for terabytes of genomic variants data 
 
Cuiping Pan; Gregory McInnes; Nicole Deflaux; Michael Snyder ; Jonathan Bingham ...
 
 
Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies 
 
Meng Wang ; Zhanglong Ji; Shuang Wang; Jihoon Kim; Hai Yang ...
 
 
 
 
Lep-MAP3: robust linkage mapping even for low-coverage whole genome sequencing data 
 
Pasi Rastas
 
 
Conditional asymptotic inference for the kernel association test 
 
Kai Wang
 
 
MetaCache: context-aware classification of metagenomic reads using minhashing 
 
André Müller; Christian Hundt ; Andreas Hildebrandt; Thomas Hankeln; Bertil Schmidt
 
 
 
STRUCTURAL BIOINFORMATICS
 
 
 
Improving protein fold recognition by extracting fold-specific features from predicted residue'residue contacts 
 
Jianwei Zhu; Haicang Zhang; Shuai Cheng Li; Chao Wang; Lupeng Kong ...
 
 
Prediction of delayed retention of antibodies in hydrophobic interaction chromatography from sequence using machine learning 
 
Tushar Jain; Todd Boland; Asparouh Lilov; Irina Burnina; Michael Brown ...
 
 
 
 
 
GENE EXPRESSION
 
 
 
proFIA: a data preprocessing workflow for flow injection analysis coupled to high-resolution mass spectrometry 
 
Alexis Delabrière ; Ulli M Hohenester; Benoit Colsch; Christophe Junot; François Fenaille ...
 
 
 
SYSTEMS BIOLOGY
 
 
 
Efficient inference for sparse latent variable models of transcriptional regulation border= 
 
Zhenwen Dai; Mudassar Iqbal; Neil D Lawrence; Magnus Rattray
 
 
 
DATA AND TEXT MINING
 
 
 
Using uncertainty to link and rank evidence from biomedical literature for model curation border= 
 
Chrysoula Zerva; Riza Batista-Navarro; Philip Day; Sophia Ananiadou
 
 
APPLICATIONS NOTES
 
 
 
 
GENOME ANALYSIS
 
 
 
HUGIn: Hi-C Unifying Genomic Interrogator 
 
Joshua S Martin ; Zheng Xu; Alex P Reiner; Karen L Mohlke; Patrick Sullivan ...
 
 
PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes 
 
Luis Vielva; María de Toro; Val F Lanza; Fernando de la Cruz
 
 
MIRMMR: binary classification of microsatellite instability using methylation and mutations 
 
Steven M Foltz; Wen-Wei Liang ; Mingchao Xie; Li Ding
 
 
 
SEQUENCE ANALYSIS
 
 
 
GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data 
 
Karol Pal; Vojtech Bystry; Tomas Reigl; Martin Demko ; Adam Krejci ...
 
 
wft4galaxy: a workflow testing tool for galaxy border= 
 
Marco Enrico Piras; Luca Pireddu; Gianluigi Zanetti
 
 
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis border= 
 
João F Matias Rodrigues; Thomas S B Schmidt; Janko Tackmann; Christian von Mering
 
 
CRISPR-DAV: CRISPR NGS data analysis and visualization pipeline 
 
Xuning Wang; Charles Tilford ; Isaac Neuhaus; Gabe Mintier; Qi Guo ...
 
 
 
STRUCTURAL BIOINFORMATICS
 
 
 
cgHeliParm: analysis of dsDNA helical parameters for coarse-grained MARTINI molecular dynamics simulations 
 
Ignacio Faustino; S J Marrink
 
 
RealityConvert: a tool for preparing 3D models of biochemical structures for augmented and virtual reality 
 
Alexandre Borrel; Denis Fourches
 
 
PyLasso: a PyMOL plugin to identify lassos  
 
Aleksandra M Gierut; Wanda Niemyska; Pawel Dabrowski-Tumanski ; Piotr Sułkowski; Joanna I Sulkowska
 
 
 
SYSTEMS BIOLOGY
 
 
 
Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems 
 
Marcin Radom; Agnieszka Rybarczyk; Bartłomiej Szawulak; Hubert Andrzejewski; Piotr Chabelski ...
 
 
 
BIOIMAGE INFORMATICS
 
 
 
EMHP: an accurate automated hole masking algorithm for single-particle cryo-EM image processing border= 
 
Zachary Berndsen; Charles Bowman; Haerin Jang; Andrew B Ward
 
 
SPECIAL ISSUE PAPERS: GIW 2016
 
 
 
 
GENE EXPRESSION
 
 
 
TimesVector: a vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes 
 
Inuk Jung; Kyuri Jo; Hyejin Kang; Hongryul Ahn; Youngjae Yu ...
 
 
 
STRUCTURAL BIOINFORMATICS
 
 
 
Spresso: an ultrafast compound pre-screening method based on compound decomposition border= 
 
Keisuke Yanagisawa; Shunta Komine; Shogo D Suzuki; Masahito Ohue ; Takashi Ishida ...
 
 
 
SEQUENCE ANALYSIS
 
 
 
MapReduce for accurate error correction of next-generation sequencing data 
 
Liang Zhao; Qingfeng Chen; Wencui Li; Peng Jiang; Limsoon Wong ...
 
 
 
GENE EXPRESSION
 
 
 
An efficient concordant integrative analysis of multiple large-scale two-sample expression data sets 
 
Yinglei Lai ; Fanni Zhang; Tapan K Nayak; Reza Modarres; Norman H Lee ...
 
 
SPECIAL ISSUE PAPER: APBC 2016
 
 
 
 
STRUCTURAL BIOINFORMATICS
 
 
 
DISC: DISulfide linkage Characterization from tandem mass spectra 
 
Yi Liu ; Weiping Sun; Baozhen Shan; Kaizhong Zhang
 
 
Unsubscribe       Manage email alerts
 
Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK.

The content of this email is protected by copyright.
 
oxforde_university.jpg
 
 
 
                                 


This email is intended for bionet@evol.mcmaster.ca. ------=_Part_854810278.1512083479214--