Subject: Bioinformatics Table of Contents for 15 August 2017 Oxford Academic
 
 
 
oxford_logo.jpg
 
 
 
 
New issue alert
 
Bioinformatics  
Volume 33 Issue 16
 
15 August 2017
 
button-issue.png
 
 
 
 
 
 
DISCOVERY NOTE
 
 
 
 
SEQUENCE ANALYSIS
 
 
 
Use of AAScatterPlot tool for monitoring the evolution of the hemagglutinin cleavage site in H9 avian influenza viruses 
 
Donald W. Lee; Gary R. Whittaker
 
 
ORIGINAL PAPERS
 
 
 
 
GENOME ANALYSIS
 
 
 
Incorporating prior information into differential network analysis using non-paranormal graphical models 
 
Xiao-Fei Zhang; Le Ou-Yang; Hong Yan
 
 
miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets border= 
 
Claudia Paicu ; Irina Mohorianu; Matthew Stocks; Ping Xu; Aurore Coince ...
 
 
 
SEQUENCE ANALYSIS
 
 
 
A penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection 
 
Sivan Leviyang ; Igor Griva; Sergio Ita; Welkin E. Johnson
 
 
SubCons: a new ensemble method for improved human subcellular localization predictions 
 
M. Salvatore; P. Warholm; N. Shu; W. Basile ; A. Elofsson
 
 
 
 
Domain prediction with probabilistic directional context border= 
 
Alejandro Ochoa ; Mona Singh
 
 
 
STRUCTURAL BIOINFORMATICS
 
 
 
GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization 
 
Mélanie Boudard; Dominique Barth; Julie Bernauer; Alain Denise; Johanne Cohen
 
 
Machine learning in computational biology to accelerate high-throughput protein expression 
 
Anand Sastry; Jonathan Monk ; Hanna Tegel; Mathias Uhlen; Bernhard O. Palsson ...
 
 
SVMQA: support'vector-machine-based protein single-model quality assessment 
 
Balachandran Manavalan; Jooyoung Lee
 
 
 
GENE EXPRESSION
 
 
 
TASIC: determining branching models from time series single cell data  
 
Sabrina Rashid; Darrell N. Kotton; Ziv Bar-Joseph
 
 
 
 
 
GENETICS AND POPULATION ANALYSIS
 
 
 
A Bayesian group sparse multi-task regression model for imaging genetics 
 
Keelin Greenlaw; Elena Szefer ; Jinko Graham; Mary Lesperance; Farouk S. Nathoo ...
 
 
 
SYSTEMS BIOLOGY
 
 
 
Gracob: a novel graph-based constant-column biclustering method for mining growth phenotype data border= 
 
Majed Alzahrani; Hiroyuki Kuwahara ; Wei Wang; Xin Gao
 
 
Systemic evaluation of cellular reprogramming processes exploiting a novel R-tool: eegc border= 
 
Xiaoyuan Zhou; Guofeng Meng; Christine Nardini; Hongkang Mei
 
 
 
DATA AND TEXT MINING
 
 
 
Removal of batch effects using distribution-matching residual networks 
 
Uri Shaham ; Kelly P. Stanton; Jun Zhao; Huamin Li; Khadir Raddassi ...
 
 
 
DATABASES AND ONTOLOGIES
 
 
 
Mapping genes for calcium signaling and their associated human genetic disorders border= 
 
Matthias Hörtenhuber; Enrique M. Toledo; Erik Smedler; Ernest Arenas; Seth Malmersjö ...
 
 
 
BIOIMAGE INFORMATICS
 
 
 
DeepEM3D: approaching human-level performance on 3D anisotropic EM image segmentation 
 
Tao Zeng; Bian Wu; Shuiwang Ji
 
 
PreMosa: extracting 2D surfaces from 3D microscopy mosaics 
 
Corinna Blasse; Stephan Saalfeld; Rapha√ęl Etournay; Andreas Sagner ; Suzanne Eaton ...
 
 
APPLICATIONS NOTES
 
 
 
 
GENOME ANALYSIS
 
 
 
FunChIP: an R/Bioconductor package for functional classification of ChIP-seq shapes 
 
Alice C. L. Parodi; Laura M. Sangalli; Simone Vantini; Bruno Amati ; Piercesare Secchi ...
 
 
EzMap: a simple pipeline for reproducible analysis of the human virome 
 
Patrick Czeczko ; Steven C. Greenway; A. P. Jason de Koning
 
 
ploidyNGS: visually exploring ploidy with Next Generation Sequencing data 
 
Renato Augusto Corr√™a dos Santos; Gustavo Henrique Goldman; Diego Mauricio Ria√Īo-Pach√≥n
 
 
HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly border=  
 
Shengfeng Huang; Mingjing Kang; Anlong Xu
 
 
 
SEQUENCE ANALYSIS
 
 
 
BioContainers: an open-source and community-driven framework for software standardization border= 
 
Felipe da Veiga Leprevost; Bj√∂rn A. Gr√ľning; Saulo Alves Aflitos; Hannes L. R√∂st; Julian Uszkoreit ...
 
 
MISA-web: a web server for microsatellite prediction border= 
 
Sebastian Beier ; Thomas Thiel; Thomas M√ľnch; Uwe Scholz; Martin Mascher
 
 
DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses 
 
Jinyu Yang; Xin Chen; Adam McDermaid ; Qin Ma
 
 
 
STRUCTURAL BIOINFORMATICS
 
 
 
PyGOLD: a python based API for docking based virtual screening workflow generation 
 
Hitesh Patel; Tobias Brinkjost; Oliver Koch
 
 
 
GENE EXPRESSION
 
 
 
ST Pipeline: an automated pipeline for spatial mapping of unique transcripts 
 
José Fernández Navarro; Joel Sjöstrand; Fredrik Salmén ; Joakim Lundeberg; Patrik L. Ståhl
 
 
 
GENETICS AND POPULATION ANALYSIS
 
 
 
RTK: efficient rarefaction analysis of large datasets border=  
 
Paul Saary; Kristoffer Forslund; Peer Bork ; Falk Hildebrand
 
 
 
SYSTEMS BIOLOGY
 
 
 
MOST-visualization: software for producing automated textbook-style maps of genome-scale metabolic networks 
 
James J. Kelley; Shay Maor; Min Kyung Kim; Anatoliy Lane; Desmond S. Lun
 
 
 
DATA AND TEXT MINING
 
 
 
mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data border= 
 
Martin Larralde; Thomas N. Lawson; Ralf J. M. Weber; Pablo Moreno ; Kenneth Haug ...
 
 
TIN-X: target importance and novelty explorer border= 
 
Daniel C. Cannon; Jeremy J. Yang; Stephen L. Mathias; Oleg Ursu; Subramani Mani ...
 
 
 
DATABASES AND ONTOLOGIES
 
 
 
Fuento: functional enrichment for bioinformatics border= 
 
David Weichselbaum; Bojan Zagrovic; Anton A. Polyansky
 
 
BioCIDER: a Contextualisation InDEx for biological Resources discovery border= 
 
Carlos Horro; Martin Cook; Teresa K. Attwood; Michelle D. Brazas ; John M. Hancock ...
 
 
CORRIGENDA
 
 
 
ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data border= 
 
Elizabeth Baskin; Rick Farouni; Ewy A. Mathé
 
 
iATC-mISF: a multi-label classifier for predicting the classes of anatomical therapeutic chemicals 
 
Xiang Cheng; Shu-Guang Zhao; Xuan Xiao ; Kuo-Chen Chou
 
 
Unsubscribe       Manage email alerts
 
Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK.

The content of this email is protected by copyright.
 
oxforde_university.jpg
 
 
 
                                 


This email is intended for bionet@evol.biology.mcmaster.ca.