Subject: Briefings in Bioinformatics Table of Contents for July 2018 ------=_Part_2034414831.1532367003359 Content-Type: text/plain;charset=UTF-8 This email is intended for bionet@evol.mcmaster.ca. ------=_Part_2034414831.1532367003359 Content-Type: text/html;charset=UTF-8 Oxford Academic
 
 
 
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Briefings in Bioinformatics  
Volume 19 Issue 4
 
July 2018
 
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Papers
 
 
 
Probabilistic natural mapping of gene-level tests for genome-wide association studies 
 
Feng Bao; Yue Deng; Mulong Du; Zhiquan Ren; Qingzhao Zhang ...
 
 
High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities border= 
 
James M Heather ; Mazlina Ismail; Theres Oakes; Benny Chain
 
 
VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria 
 
Jun Li; Cui Tai; Zixin Deng; Weihong Zhong ; Yongqun He ...
 
 
Gene co-expression analysis for functional classification and gene'disease predictions border= 
 
Sipko van Dam; Urmo Võsa; Adriaan van der Graaf; Lude Franke; João Pedro de Magalhães
 
 
How trees allocate carbon for optimal growth: insight from a game-theoretic model 
 
Liyong Fu; Lidan Sun ; Han Hao; Libo Jiang; Sheng Zhu ...
 
 
HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly 
 
Lidan Sun; Jing Wang; Xuli Zhu; Libo Jiang ; Kirk Gosik ...
 
 
A simple way to detect disease-associated cellular molecular alterations from mixed-cell blood samples 
 
Guini Hong ; Hongdong Li; Mengyao Li; Weicheng Zheng; Jing Li ...
 
 
hppRNA'a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples 
 
Dapeng Wang
 
 
Genome-wide characterization of lncRNAs in acute myeloid leukemia 
 
Lijun Lei; Siyu Xia; Dan Liu; Xiaoqing Li; Jing Feng ...
 
 
SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci 
 
Yajing Hao; Lili Zhang ; Yiwei Niu; Tanxi Cai; Jianjun Luo ...
 
 
A landscape of synthetic viable interactions in cancer 
 
Yunyan Gu; Ruiping Wang; Yue Han; Wenbin Zhou ; Zhangxiang Zhao ...
 
 
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning border= 
 
Khader Shameer; Benjamin S Glicksberg; Rachel Hodos; Kipp W Johnson ; Marcus A Badgeley ...
 
 
Measuring the diversity of the human microbiota with targeted next-generation sequencing 
 
Francesca Finotello ; Eleonora Mastrorilli; Barbara Di Camillo
 
 
Top considerations for creating bioinformatics software documentation border= 
 
Mehran Karimzadeh; Michael M Hoffman
 
 
Software Reviews
 
 
 
Methodological implementation of mixed linear models in multi-locus genome-wide association studies border= 
 
Yang-Jun Wen; Hanwen Zhang; Yuan-Li Ni; Bo Huang ; Jin Zhang ...
 
 
Feasibility of sample size calculation for RNA-seq studies 
 
Alicia Poplawski ; Harald Binder
 
 
Opinion Note
 
 
 
Benchmarking CRISPR on-target sgRNA design 
 
Jifang Yan; Guohui Chuai ; Chi Zhou; Chenyu Zhu; Jing Yang ...
 
 
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