Subject: Briefings in Bioinformatics Table of Contents for November 2017 ------=_Part_1547848212.1511716300043 Content-Type: text/plain;charset=UTF-8 Oxford Academic [[HeaderAdvertisingToken]] https://silverchair.emailcampaigns.net/media/50/509735/OUP/oxford_logo.jpg?g72331686458 (http://click.skem1.com/click/l2f3i-cs9hdi-66q6ox31/) [[BannerToken]] [[AlertTitleToken]] [[SelfServeTextToken]] [[FirstAdvertisingToken]] [[TOCMainToken]] Unsubscribe (http://click.skem1.com/form?l2f3i--ply5-66q6ox30&sl=tq&t=5)Manage email alerts (http://click.skem1.com/click/l2f3i-cs9hdj-66q6ox32/) Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK. The content of this email is protected by copyright. https://silverchair.emailcampaigns.net/media/50/509735/OUP/oxforde_university.jpg?g72331733632 (http://click.skem1.com/click/l2f3i-cs9hdk-66q6ox33/) [[BottomAdvertisingToken]] This email is intended for bionet@evol.mcmaster.ca. ------=_Part_1547848212.1511716300043 Content-Type: text/html;charset=UTF-8 Oxford Academic
 
 
 
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Briefings in Bioinformatics  
Volume 18 Issue 6
 
November 2017
 
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Editorial
 
 
 
Editorial 
 
Bishop Martin
 
 
Papers
 
 
 
Benchmarking computational tools for polymorphic transposable element detection 
 
Lavanya Rishishwar ; Leonardo Mariño-Ramírez; I King Jordan
 
 
AlloMap6: an R package for genetic linkage analysis in allohexaploids 
 
Xuli Zhu; Huan Li; Meixia Ye; Libo Jiang; Mengmeng Sang ...
 
 
What is the probability of replicating a statistically significant association in genome-wide association studies? 
 
Wei Jiang; Jing-Hao Xue ; Weichuan Yu
 
 
Characterization of MinION nanopore data for resequencing analyses 
 
Alberto Magi ; Betti Giusti; Lorenzo Tattini
 
 
 
 
Rare variant association test in family-based sequencing studies 
 
Xuefeng Wang ; Zhenyu Zhang; Nathan Morris; Tianxi Cai; Seunggeun Lee ...
 
 
Robust logistic regression to narrow down the winner's curse for rare and recessive susceptibility variants  
 
Miriam Kesselmeier; Justo Lorenzo Bermejo
 
 
Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations border= 
 
Zhifu Sun; Aditya Bhagwate; Naresh Prodduturi; Ping Yang; Jean-Pierre A Kocher
 
 
Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes 
 
Siyu Xia; Jing Feng; Lijun Lei; Jun Hu ; Linjian Xia ...
 
 
RNAEditor: easy detection of RNA editing events and the introduction of editing islands 
 
David John ; Tyler Weirick; Stefanie Dimmeler; Shizuka Uchida
 
 
 
 
miRNA'miRNA crosstalk: from genomics to phenomics 
 
Juan Xu; Tingting Shao; Na Ding; Yongsheng Li; Xia Li
 
 
Software Review
 
 
 
Unraveling chloroplast transcriptomes with ChloroSeq, an organelle RNA-Seq bioinformatics pipeline border= 
 
David Roy Smith ; Matheus Sanitá Lima
 
 
Opinion Note
 
 
 
Recording negative results of protein'protein interaction assays: an easy way to deal with the biases and errors of interactomic data sets 
 
David Alvarez-Ponce
 
 
Papers
 
 
 
Recent advances in sequence-based protein structure prediction 
 
Dukka B KC
 
 
Protein side-chain packing problem: is there still room for improvement? 
 
José Colbes; Rosario I Corona; Christian Lezcano; David Rodríguez; Carlos A Brizuela
 
 
Exploring and visualizing multidimensional data in translational research platforms border= 
 
William Dunn, Jr; Anita Burgun; Marie-Odile Krebs; Bastien Rance
 
 
A protein network descriptor server and its use in studying protein, disease, metabolic and drug targeted networks border= 
 
Peng Zhang; Lin Tao ; Xian Zeng; Chu Qin; Shangying Chen ...
 
 
A novel computational method for inferring competing endogenous interactions 
 
Davide S Sardina; Salvatore Alaimo; Alfredo Ferro; Alfredo Pulvirenti ; Rosalba Giugno
 
 
Opportunities for community awareness platforms in personal genomics and bioinformatics education 
 
Lucia Bianchi ; Pietro Liò
 
 
Corrigendum
 
 
 
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures border= 
 
Javier De Las Rivas; Cesar Bonavides-Martínez; Francisco Jose Campos-Laborie
 
 
Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity 
 
Huilin Wang; Liubin Feng; Geoffrey I Webb; Lukasz Kurgan ; Jiangning Song ...
 
 
Systematic bias of correlation coefficient may explain negative accuracy of genomic prediction 
 
Yao Zhou ; M Isabel Vales; Aoxue Wang; Zhiwu Zhang
 
 
Erratum
 
 
 
Next-generation sequencing data analysis 
 
Stadtländer Christian T K.-H
 
 
The genetic architecture of heterochrony as a quantitative trait: lessons from a computational model 
 
Lidan Sun; Mengmeng Sang; Chenfei Zheng; Dongyang Wang; Hexin Shi ...
 
 
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