Subject: PLOS Computational Biology Volume 13(5) May 2017 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: May 01, 2017 to May 31, 2017

Editorials

Ten simple rules to consider regarding preprint submission

Ten simple rules to make the most out of your undergraduate research career

Ten simple rules for surviving an interdisciplinary PhD

Topic Page

Transcriptomics technologies

Education

Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers

Research Articles

phyC: Clustering cancer evolutionary trees

Slow diffusive dynamics in a chaotic balanced neural network

Co-occurring protein phosphorylation are functionally associated

Nucleotide-time alignment for molecular recorders

Modelling of the cancer cell cycle as a tool for rational drug development: A systems pharmacology approach to cyclotherapy

Top-down control of cortical gamma-band communication via pulvinar induced phase shifts in the alpha rhythm

Mechanisms underlying different onset patterns of focal seizures

A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns

A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration

MAGERI: Computational pipeline for molecular-barcoded targeted resequencing

Widespread position-specific conservation of synonymous rare codons within coding sequences

The decay of motor adaptation to novel movement dynamics reveals an asymmetry in the stability of motion state-dependent learning

Epidemiological modeling of Trypanosoma cruzi: Low stercorarian transmission and failure of host adaptive immunity explain the frequency of mixed infections in humans

Post-transcriptional regulation across human tissues

Sequential inference as a mode of cognition and its correlates in fronto-parietal and hippocampal brain regions

Single-molecule protein identification by sub-nanopore sensors

Short-term activity cycles impede information transmission in ant colonies

Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes

FIMTrack: An open source tracking and locomotion analysis software for small animals

Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimates

A predictive coding account of bistable perception - a model-based fMRI study

An independent component analysis confounding factor correction framework for identifying broad impact expression quantitative trait loci

SteadyCom: Predicting microbial abundances while ensuring community stability

High-order epistasis shapes evolutionary trajectories

Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks

Automatically tracking neurons in a moving and deforming brain

PyLDM - An open source package for lifetime density analysis of time-resolved spectroscopic data

Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia

Protein charge distribution in proteomes and its impact on translation

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities

Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach

Spontaneous cortical activity is transiently poised close to criticality

An agent-based model of leukocyte transendothelial migration during atherogenesis

ROTS: An R package for reproducibility-optimized statistical testing

Predicting cryptic links in host-parasite networks

Chemomechanical regulation of myosin Ic cross-bridges: Deducing the elastic properties of an ensemble from single-molecule mechanisms

Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile

sourceR: Classification and source attribution of infectious agents among heterogeneous populations

On the effects of alternative optima in context-specific metabolic model predictions

Adaptation towards scale-free dynamics improves cortical stimulus discrimination at the cost of reduced detection

Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI)

Dynamic decomposition of spatiotemporal neural signals

Corrections

Correction: Complex Dynamics of Virus Spread from Low Infection Multiplicities: Implications for the Spread of Oncolytic Viruses

Correction: Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches

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