Subject: PLOS Computational Biology Volume 13(7) July 2017 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: July 01, 2017 to July 31, 2017

Research Articles

Speciation trajectories in recombining bacterial species

Universal features of dendrites through centripetal branch ordering

Expanding signaling-molecule wavefront model of cell polarization in the Drosophila wing primordium

Classification and analysis of a large collection of in vivo bioassay descriptions

A phase transition induces chaos in a predator-prey ecosystem with a dynamic fitness landscape

Quantifying critical states of complex diseases using single-sample dynamic network biomarkers

Epistasis in genomic and survival data of cancer patients

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

Rapid target foraging with reach or gaze: The hand looks further ahead than the eye

Combination therapeutics of Nilotinib and radiation in acute lymphoblastic leukemia as an effective method against drug-resistance

Inherent limitations of probabilistic models for protein-DNA binding specificity

Cannabinoids disrupt memory encoding by functionally isolating hippocampal CA1 from CA3

Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a

Inverse stochastic resonance in networks of spiking neurons

Hybrid modeling and prediction of dynamical systems

Noise, multisensory integration, and previous response in perceptual disambiguation

Temporal specificity of the initial adaptive response in motor adaptation

Cooperative stochastic binding and unbinding explain synaptic size dynamics and statistics

Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model

Possible roles of mechanical cell elimination intrinsic to growing tissues from the perspective of tissue growth efficiency and homeostasis

A new index for characterizing micro-bead motion in a flow induced by ciliary beating: Part I, experimental analysis

A new index for characterizing micro-bead motion in a flow induced by ciliary beating: Part II, modeling

Deciphering the regulation of P2X4 receptor channel gating by ivermectin using Markov models

Atomistic fingerprint of hyaluronan'CD44 binding

A curated genome-scale metabolic model of Bordetella pertussis metabolism

Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models

Blood vessel tortuosity selects against evolution of aggressive tumor cells in confined tissue environments: A modeling approach

CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets

Stress-induced mutagenesis: Stress diversity facilitates the persistence of mutator genes

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors

Effect of depth information on multiple-object tracking in three dimensions: A probabilistic perspective

Advances in using Internet searches to track dengue

Grandmothering and cognitive resources are required for the emergence of menopause and extensive post-reproductive lifespan

lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models

A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation

beta -adrenergic signaling broadly contributes to LTP induction

MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions

Long-time analytic approximation of large stochastic oscillators: Simulation, analysis and inference

Reconstructing the regulatory circuit of cell fate determination in yeast mating response

A mixture of sparse coding models explaining properties of face neurons related to holistic and parts-based processing

OpenMM 7: Rapid development of high performance algorithms for molecular dynamics

Spatial dynamics and control of a crop pathogen with mixed-mode transmission

Adjudicating between face-coding models with individual-face fMRI responses

mRNA/protein sequence complementarity and its determinants: The impact of affinity scales

Recurrently connected and localized neuronal communities initiate coordinated spontaneous activity in neuronal networks

TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions

Upregulation of an inward rectifying K+ channel can rescue slow Ca2+ oscillations in K(ATP) channel deficient pancreatic islets

Growth of bacteria in 3-d colonies

Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors

Self-regulation strategy, feedback timing and hemodynamic properties modulate learning in a simulated fMRI neurofeedback environment

A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium

Dissociating error-based and reinforcement-based loss functions during sensorimotor learning

Learning and executing goal-directed choices by internally generated sequences in spiking neural circuits

PCSF: An R-package for network-based interpretation of high-throughput data

Corrections

Correction: Accuracy Maximization Analysis for Sensory-Perceptual Tasks: Computational Improvements, Filter Robustness, and Coding Advantages for Scaled Additive Noise

Correction: Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis

Correction: Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI)

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