Subject: PLOS Computational Biology Volume 13(9) September 2017 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: September 01, 2017 to September 29, 2017

Editorials

Ten simple rules for successfully completing a graduate degree in Latin America

How can computation advance microbiome research?

Ten simple rules for developing a mentor'mentee expectations document

Ten simple rules for structuring papers

Education

The eBioKit, a stand-alone educational platform for bioinformatics

Research Articles

A conceptual and computational framework for modelling and understanding the non-equilibrium gene regulatory networks of mouse embryonic stem cells

A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms

Differential receptive field organizations give rise to nearly identical neural correlations across three parallel sensory maps in weakly electric fish

DeepPep: Deep proteome inference from peptide profiles

Estimating short-term synaptic plasticity from pre- and postsynaptic spiking

kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity

Two passive mechanical conditions modulate power generation by the outer hair cells

Population FBA predicts metabolic phenotypes in yeast

Mobility can promote the evolution of cooperation via emergent self-assortment dynamics

Cost-efficient vaccination protocols for network epidemiology

Exploring the inhibition mechanism of adenylyl cyclase type 5 by n-terminal myristoylated Galpha i1

Funneled potential and flux landscapes dictate the stabilities of both the states and the flow: Fission yeast cell cycle

Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations

Projecting social contact matrices in 152 countries using contact surveys and demographic data

Analysis of the relationship between coexpression domains and chromatin 3D organization

Stochastic principles governing alternative splicing of RNA

Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

C-reactive protein upregulates the whole blood expression of CD59 - an integrative analysis

Quantifying the effects of antiangiogenic and chemotherapy drug combinations on drug delivery and treatment efficacy

Probing eukaryotic cell mechanics via mesoscopic simulations

Reconstructing promoter activity from Lux bioluminescent reporters

Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization

Synthesizing developmental trajectories

Probabilistic models for neural populations that naturally capture global coupling and criticality

The logic of the floral transition: Reverse-engineering the switch controlling the identity of lateral organs

Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer

Limited synapse overproduction can speed development but sometimes with long-term energy and discrimination penalties

Phase changes in neuronal postsynaptic spiking due to short term plasticity

Altering neuronal excitability to preserve network connectivity in a computational model of Alzheimer's disease

Correlated receptor transport processes buffer single-cell heterogeneity

Relating dynamic brain states to dynamic machine states: Human and machine solutions to the speech recognition problem

Force encoding in muscle spindles during stretch of passive muscle

Predictive representations can link model-based reinforcement learning to model-free mechanisms

Infectious reactivation of cytomegalovirus explaining age- and sex-specific patterns of seroprevalence

A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma

Exploiting ecology in drug pulse sequences in favour of population reduction

Flexibility to contingency changes distinguishes habitual and goal-directed strategies in humans

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect

Interactions between the tumor and the blood systemic response of breast cancer patients

Multi-layer network utilizing rewarded spike time dependent plasticity to learn a foraging task

Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency

Corrections

Correction: lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites

Correction: Dose-response relationships for environmentally mediated infectious disease transmission models

Correction: Multiscale Approach to the Determination of the Photoactive Yellow Protein Signaling State Ensemble

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