Subject: PLOS Computational Biology Volume 15(12) December 2019 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit


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New Articles in PLOS Computational Biology

PUBLISHED: December 01, 2019 to December 31, 2019


Establishment of computational biology in Greece and Cyprus: Past, present, and future


Nine quick tips for analyzing network data

Research Articles

Statistics of correlated percolation in a bacterial community

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

Autistic traits influence the strategic diversity of information sampling: Insights from two-stage decision models

The effect of inhibition on rate code efficiency indicators

A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model

CBNA: A control theory based method for identifying coding and non-coding cancer drivers

A cell-based probabilistic approach unveils the concerted action of miRNAs

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli

Inferring reaction network structure from single-cell, multiplex data, using toric systems theory

Stability of spontaneous, correlated activity in mouse auditory cortex

Statistical inference in ensemble modeling of cellular metabolism

Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics

From energy to cellular forces in the Cellular Potts Model: An algorithmic approach

Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level

Incomplete information about the partner affects the development of collaborative strategies in joint action

The benefits of insect-swarm hunting to echolocating bats, and its influence on the evolution of bat echolocation signals

Molecular sampling at logarithmic rates for next-generation sequencing

NUFEB: A massively parallel simulator for individual-based modelling of microbial communities

Estimation of temporal covariances in pathogen dynamics using Bayesian multivariate autoregressive models

Probing neural networks for dynamic switches of communication pathways

Large benefits to youth-focused HIV treatment-as-prevention efforts in generalized heterosexual populations: An agent-based simulation model

Revisiting the "satisfaction of spatial restraints" approach of MODELLER for protein homology modeling

ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest

Representation learning of genomic sequence motifs with convolutional neural networks

Avoidance of non-localizable obstacles in echolocating bats: A robotic model

Motion prediction enables simulated MR-imaging of freely moving model organisms

Chemotaxis in external fields: Simulations for active magnetic biological matter

Evidence for a multi-level trophic organization of the human gut microbiome

Benchmarking network algorithms for contextualizing genes of interest

Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection

The dynamics of motor learning through the formation of internal models

Regulatory context drives conservation of glycine riboswitch aptamers

Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways

Interkinetic nuclear movements promote apical expansion in pseudostratified epithelia at the expense of apicobasal elongation

Protons in small spaces: Discrete simulations of vesicle acidification

A Multi-State Model of the CaMKII Dodecamer Suggests a Role for Calmodulin in Maintenance of Autophosphorylation

Overlap matrix completion for predicting drug-associated indications

Stochasticity of replication forks' speeds plays a key role in the dynamics of DNA replication

A novel machine learning based approach for iPS progenitor cell identification

Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15

Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs

Neuronal population model of globular bushy cells covering unit-to-unit variability


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