Subject: PLOS Computational Biology Volume 15(8) August 2019 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: August 01, 2019 to August 30, 2019

Education

Twelve quick tips for designing sound dynamical models for bioprocesses

Research Articles

Efficiency of protein synthesis inhibition depends on tRNA and codon compositions

Bayesian hypothesis testing and experimental design for two-photon imaging data

Every which way? On predicting tumor evolution using cancer progression models

Reappraising the utility of Google Flu Trends

Motion, fixation probability and the choice of an evolutionary process

Colony entropy'Allocation of goods in ant colonies

Energy-efficient information transfer at thalamocortical synapses

Predicting kinase inhibitors using bioactivity matrix derived informer sets

Reduced model to predict thrombin and fibrin during thrombosis on collagen/tissue factor under venous flow: Roles of gamma '-fibrin and factor XIa

Connecting signaling and metabolic pathways in EGF receptor-mediated oncogenesis of glioblastoma

Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration

On the optimal design of metabolic RNA labeling experiments

Arrhythmia mechanisms and spontaneous calcium release: Bi-directional coupling between re-entrant and focal excitation

Directed migration shapes cooperation in spatial ecological public goods games

Predicting the effects of deep brain stimulation using a reduced coupled oscillator model

A generative learning model for saccade adaptation

Aggressive or moderate drug therapy for infectious diseases? Trade-offs between different treatment goals at the individual and population levels

Machine learning-based microarray analyses indicate low-expression genes might collectively influence PAH disease

Size and structure of the sequence space of repeat proteins

Recombination and mutational robustness in neutral fitness landscapes

Pulse transit time estimation of aortic pulse wave velocity and blood pressure using machine learning and simulated training data

FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics

Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity

PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks

Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets

TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements

Uncertainty reduction in biochemical kinetic models: Enforcing desired model properties

Learning to synchronize: How biological agents can couple neural task modules for dealing with the stability-plasticity dilemma

Variation in plastic responses to light results from selection in different competitive environments'A game theoretical approach using virtual plants

Identifying nonlinear dynamical systems via generative recurrent neural networks with applications to fMRI

Gaussian curvature and the budding kinetics of enveloped viruses

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

Transient crosslinking kinetics optimize gene cluster interactions

ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins

A mathematical model of calcium dynamics: Obesity and mitochondria-associated ER membranes

A computational model for gonadotropin releasing cells in the teleost fish medaka

Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces

Cooperative adaptation to therapy (CAT) confers resistance in heterogeneous non-small cell lung cancer

Selective recruitment of cortical neurons by electrical stimulation

CNEr: A toolkit for exploring extreme noncoding conservation

A lipophilicity-based energy function for membrane-protein modelling and design

Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences

Tracking Pseudomonas aeruginosa transmissions due to environmental contamination after discharge in ICUs using mathematical models

Non-trophic interactions strengthen the diversity'functioning relationship in an ecological bioenergetic network model

A benchmark of computational CRISPR-Cas9 guide design methods

Network analyses to quantify effects of host movement in multilevel disease transmission models using foot and mouth disease in Cameroon as a case study

The formation of preference in risky choice

Anatomically accurate model of EMG during index finger flexion and abduction derived from diffusion tensor imaging

Fast uncertainty quantification for dynamic flux balance analysis using non-smooth polynomial chaos expansions

Effects of persistent sodium current blockade in respiratory circuits depend on the pharmacological mechanism of action and network dynamics

Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations

Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA

Mechanical properties of tubulin intra- and inter-dimer interfaces and their implications for microtubule dynamic instability

PanoView: An iterative clustering method for single-cell RNA sequencing data

Red blood cells stabilize flow in brain microvascular networks

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