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PLoS Computational Biology
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EditorialA Review of 2011 for PLoS Computational Biology PerspectiveBeyond Statistical Significance: Implications of Network Structure on Neuronal Activity ReviewComputational and Statistical Analysis of Protein Mass Spectrometry Data Research ArticlesA Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser Balancing Feed-Forward Excitation and Inhibition via Hebbian Inhibitory Synaptic Plasticity Macro-level Modeling of the Response of C. elegans Reproduction to Chronic Heat Stress Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer Senescent Cells in Growing Tumors: Population Dynamics and Cancer Stem Cells Learning and Generalization under Ambiguity: An fMRI Study A Theory of Rate Coding Control by Intrinsic Plasticity Effects Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism Membrane Properties and the Balance between Excitation and Inhibition Control Gamma-Frequency Oscillations Arising from Feedback Inhibition HIV-1 Polymerase Inhibition by Nucleoside Analogs: Cellular- and Kinetic Parameters of Efficacy, Susceptibility and Resistance Selection Prediction by Promoter Logic in Bacterial Quorum Sensing Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations Global Analysis of Small Molecule Binding to Related Protein Targets Protein Design Using Continuous Rotamers A Dynamic View of Domain-Motif Interactions Adjusting Phenotypes by Noise Control Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth Maximization of Learning Speed in the Motor Cortex Due to Neuronal Redundancy Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding Residual Structures, Conformational Fluctuations, and Electrostatic Interactions in the Synergistic Folding of Two Intrinsically Disordered Proteins Short Conduction Delays Cause Inhibition Rather than Excitation to Favor Synchrony in Hybrid Neuronal Networks of the Entorhinal Cortex Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection Failure of Adaptive Self-Organized Criticality during Epileptic Seizure Attacks Dopamine, Affordance and Active Inference Landscape Epidemiology and Control of Pathogens with Cryptic and Long-Distance Dispersal: Sudden Oak Death in Northern Californian Forests A Dynamical Model of Oocyte Maturation Unveils Precisely Orchestrated Meiotic Decisions Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies A Model of Ant Route Navigation Driven by Scene Familiarity A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis A Viral Dynamic Model for Treatment Regimens with Direct-acting Antivirals for Chronic Hepatitis C Infection
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