Interview
A Half-Century of Inspiration: An Interview with Hamilton Smith
Jane Gitschier
Review
Tempo and Mode in Evolution of Transcriptional Regulation
Kacy L. Gordon, Ilya Ruvinsky
Research Articles
Two-Component Elements Mediate Interactions between Cytokinin and Salicylic Acid in Plant Immunity
Cristiana T. Argueso, Fernando J. Ferreira, Petra Epple, Jennifer P. C. To, Claire E. Hutchison, G. Eric Schaller, Jeffery L. Dangl, Joseph J. Kieber
Inference of Population Structure using Dense Haplotype Data
Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush
A Genome-Wide Association Study Identified AFF1 as a Susceptibility Locus for Systemic Lupus Eyrthematosus in Japanese
Yukinori Okada, Kenichi Shimane, Yuta Kochi, Tomoko Tahira, Akari Suzuki, Koichiro Higasa, Atsushi Takahashi, Tetsuya Horita, Tatsuya Atsumi, Tomonori Ishii, Akiko Okamoto, Keishi Fujio, Michito Hirakata, Hirofumi Amano, Yuya Kondo, Satoshi Ito, Kazuki Takada, Akio Mimori, Kazuyoshi Saito, Makoto Kamachi, Yasushi Kawaguchi, Katsunori Ikari, Osman Wael Mohammed, Koichi Matsuda, Chikashi Terao, Koichiro Ohmura, Keiko Myouzen, Naoya Hosono, Tatsuhiko Tsunoda, Norihiro Nishimoto, Tsuneyo Mimori, Fumihiko Matsuda, Yoshiya Tanaka, Takayuki Sumida, Hisashi Yamanaka, Yoshinari Takasaki, Takao Koike, Takahiko Horiuchi, Kenshi Hayashi, Michiaki Kubo, Naoyuki Kamatani, Ryo Yamada, Yusuke Nakamura, Kazuhiko Yamamoto
Reduced Lentivirus Susceptibility in Sheep with TMEM154 Mutations
Michael P. Heaton, Michael L. Clawson, Carol G. Chitko-Mckown, Kreg A. Leymaster, Timothy P. L. Smith, Gregory P. Harhay, Stephen N. White, Lynn M. Herrmann-Hoesing, Michelle R. Mousel, Gregory S. Lewis, Theodore S. Kalbfleisch, James E. Keen, William W. Laegreid
USF-1 Is Critical for Maintaining Genome Integrity in Response to UV-Induced DNA Photolesions
Yorann Baron, Sébastien Corre, Nicolas Mouchet, Sophie Vaulont, Sharon Prince, Marie-Dominique Galibert
Heterochromatin Formation Promotes Longevity and Represses Ribosomal RNA Synthesis
Kimberly Larson, Shian-Jang Yan, Amy Tsurumi, Jacqueline Liu, Jun Zhou, Kriti Gaur, Dongdong Guo, Thomas H. Eickbush, Willis X. Li
High-Density SNP Mapping of the HLA Region Identifies Multiple Independent Susceptibility Loci Associated with Selective IgA Deficiency
Ricardo C. Ferreira, Qiang Pan-Hammarström, Robert R. Graham, Gumersindo Fontán, Annette T. Lee, Ward Ortmann, Ning Wang, Elena Urcelay, Miguel Fernández-Arquero, Concepción Núñez, Gudmundur Jorgensen, Björn R. Ludviksson, Sinikka Koskinen, Katri Haimila, Leonid Padyukov, Peter K. Gregersen, Lennart Hammarström, Timothy W. Behrens
A Genome-Wide Association Scan on the Levels of Markers of Inflammation in Sardinians Reveals Associations That Underpin Its Complex Regulation
Silvia Naitza, Eleonora Porcu, Maristella Steri, Dennis D. Taub, Antonella Mulas, Xiang Xiao, James Strait, Mariano Dei, Sandra Lai, Fabio Busonero, Andrea Maschio, Gianluca Usala, Magdalena Zoledziewska, Carlo Sidore, Ilenia Zara, Maristella Pitzalis, Alessia Loi, Francesca Virdis, Roberta Piras, Francesca Deidda, Michael B. Whalen, Laura Crisponi, Antonio Concas, Carlo Podda, Sergio Uzzau, Paul Scheet, Dan L. Longo, Edward Lakatta, Gonçalo R. Abecasis, Antonio Cao, David Schlessinger, Manuela Uda, Serena Sanna, Francesco Cucca
A Flexible Bayesian Model for Studying Gene–Environment Interaction
Kai Yu, Sholom Wacholder, William Wheeler, Zhaoming Wang, Neil Caporaso, Maria Teresa Landi, Faming Liang
Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
Robert Kofler, Andrea J. Betancourt, Christian Schlötterer
Sex Pheromone Evolution Is Associated with Differential Regulation of the Same Desaturase Gene in Two Genera of Leafroller Moths
Jérôme Albre, Marjorie A. Liénard, Tamara M. Sirey, Silvia Schmidt, Leah K. Tooman, Colm Carraher, David R. Greenwood, Christer Löfstedt, Richard D. Newcomb
Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression
Jingyuan Fu, Marcel G. M. Wolfs, Patrick Deelen, Harm-Jan Westra, Rudolf S. N. Fehrmann, Gerard J. te Meerman, Wim A. Buurman, Sander S. M. Rensen, Harry J. M. Groen, Rinse K. Weersma, Leonard H. van den Berg, Jan Veldink, Roel A. Ophoff, Harold Snieder, David van Heel, Ritsert C. Jansen, Marten H. Hofker, Cisca Wijmenga, Lude Franke
A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli
Olin K. Silander, Nela Nikolic, Alon Zaslaver, Anat Bren, Ilya Kikoin, Uri Alon, Martin Ackermann
DNA Methylation and Gene Expression Changes in Monozygotic Twins Discordant for Psoriasis: Identification of Epigenetically Dysregulated Genes
Kristina Gervin, Magnus D. Vigeland, Morten Mattingsdal, Martin Hammerø, Heidi Nygård, Anne O. Olsen, Ingunn Brandt, Jennifer R. Harris, Dag E. Undlien, Robert Lyle
Adaptation and Preadaptation of Salmonella enterica to Bile
Sara B. Hernández, Ignacio Cota, Adrien Ducret, Laurent Aussel, Josep Casadesús
Cohesin Protects Genes against γH2AX Induced by DNA Double-Strand Breaks
Pierre Caron, Francois Aymard, Jason S. Iacovoni, Sébastien Briois, Yvan Canitrot, Beatrix Bugler, Laurent Massip, Ana Losada, Gaëlle Legube
A Spontaneous Mutation of the Rat Themis Gene Leads to Impaired Function of Regulatory T Cells Linked to Inflammatory Bowel Disease
Marianne Chabod, Christophe Pedros, Lucille Lamouroux, Céline Colacios, Isabelle Bernard, Dominique Lagrange, Daniela Balz-Hara, Jean-Francois Mosnier, Christian Laboisse, Nathalie Vergnolle, Olivier Andreoletti, Marie-Paule Roth, Roland Liblau, Gilbert J. Fournié, Abdelhadi Saoudi, Anne S. Dejean
RIC-7 Promotes Neuropeptide Secretion
Yingsong Hao, Zhitao Hu, Derek Sieburth, Joshua M. Kaplan
Progressive Polycomb Assembly on H3K27me3 Compartments Generates Polycomb Bodies with Developmentally Regulated Motion
Thierry Cheutin, Giacomo Cavalli
Nucleolar Association and Transcriptional Inhibition through 5S rDNA in Mammals
Andrew M. Fedoriw, Joshua Starmer, Della Yee, Terry Magnuson
Insulin Signaling Regulates Fatty Acid Catabolism at the Level of CoA Activation
Xiaojun Xu, Peddinti Gopalacharyulu, Tuulikki Seppänen-Laakso, Anna-Liisa Ruskeepää, Cho Cho Aye, Brian P. Carson, Silvia Mora, Matej Orešič, Aurelio A. Teleman
Genomic Ancestry of North Africans Supports Back-to-Africa Migrations
Brenna M. Henn, Laura R. Botigué, Simon Gravel, Wei Wang, Abra Brisbin, Jake K. Byrnes, Karima Fadhlaoui-Zid, Pierre A. Zalloua, Andres Moreno-Estrada, Jaume Bertranpetit, Carlos D. Bustamante, David Comas
The Drosophila melanogaster Seminal Fluid Protease “Seminase” Regulates Proteolytic and Post-Mating Reproductive Processes
Brooke A. LaFlamme, K. Ravi Ram, Mariana F. Wolfner
Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli
Selwyn Quan, J. Christian J. Ray, Zakari Kwota, Trang Duong, Gábor Balázsi, Tim F. Cooper, Russell D. Monds
A Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis
Angela Bruex, Raghunandan M. Kainkaryam, Yana Wieckowski, Yeon Hee Kang, Christine Bernhardt, Yang Xia, Xiaohua Zheng, Jean Y. Wang, Myeong Min Lee, Philip Benfey, Peter J. Woolf, John Schiefelbein
An siRNA Screen in Pancreatic Beta Cells Reveals a Role for Gpr27 in Insulin Production
Gregory M. Ku, Zachary Pappalardo, Chun Chieh Luo, Michael S. German, Michael T. McManus
Cdc5-Dependent Asymmetric Localization of Bfa1 Fine-Tunes Timely Mitotic Exit
Junwon Kim, Guangming Luo, Young Yil Bahk, Kiwon Song
A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies
Molly E. McCue, Danika L. Bannasch, Jessica L. Petersen, Jessica Gurr, Ernie Bailey, Matthew M. Binns, Ottmar Distl, Gérard Guérin, Telhisa Hasegawa, Emmeline W. Hill, Tosso Leeb, Gabriella Lindgren, M. Cecilia T. Penedo, Knut H. Røed, Oliver A. Ryder, June E. Swinburne, Teruaki Tozaki, Stephanie J. Valberg, Mark Vaudin, Kerstin Lindblad-Toh, Claire M. Wade, James R. Mickelson
Genetic Evidence for an Indispensable Role of Somatic Embryogenesis Receptor Kinases in Brassinosteroid Signaling
Xiaoping Gou, Hongju Yin, Kai He, Junbo Du, Jing Yi, Shengbao Xu, Honghui Lin, Steven D. Clouse, Jia Li
Cytoplasmic Polyadenylation Element Binding Protein Deficiency Stimulates PTEN and Stat3 mRNA Translation and Induces Hepatic Insulin Resistance
Ilya M. Alexandrov, Maria Ivshina, Dae Young Jung, Randall Friedline, Hwi Jin Ko, Mei Xu, Bryan O'Sullivan-Murphy, Rita Bortell, Yen-Tsung Huang, Fumihiko Urano, Jason K. Kim, Joel D. Richter
Parallel Mapping and Simultaneous Sequencing Reveals Deletions in BCAN and FAM83H Associated with Discrete Inherited Disorders in a Domestic Dog Breed
Oliver P. Forman, Jacques Penderis, Claudia Hartley, Louisa J. Hayward, Sally L. Ricketts, Cathryn S. Mellersh
Calpains Mediate Integrin Attachment Complex Maintenance of Adult Muscle in Caenorhabditis elegans
Timothy Etheridge, Elizabeth A. Oczypok, Susann Lehmann, Brandon D. Fields, Freya Shephard, Lewis A. Jacobson, Nathaniel J. Szewczyk
Genome Engineering in Vibrio cholerae: A Feasible Approach to Address Biological Issues
Marie-Eve Val, Ole Skovgaard, Magaly Ducos-Galand, Michael J. Bland, Didier Mazel
Functional Specialization of the Plant miR396 Regulatory Network through Distinct MicroRNA–Target Interactions
Juan M. Debernardi, Ramiro E. Rodriguez, Martin A. Mecchia, Javier F. Palatnik
Microenvironmental Regulation by Fibrillin-1
Gerhard Sengle, Ko Tsutsui, Douglas R. Keene, Sara F. Tufa, Eric J. Carlson, Noe L. Charbonneau, Robert N. Ono, Takako Sasaki, Mary K. Wirtz, John R. Samples, Liselotte I. Fessler, John H. Fessler, Kiyotoshi Sekiguchi, Susan J. Hayflick, Lynn Y. Sakai
Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm
Milan Spasic, Caroline C. Friedel, Johanna Schott, Jochen Kreth, Kathrin Leppek, Sarah Hofmann, Sevim Ozgur, Georg Stoecklin
Checkpoints in a Yeast Differentiation Pathway Coordinate Signaling during Hyperosmotic Stress
Michal J. Nagiec, Henrik G. Dohlman
Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks
Hisato Kobayashi, Takayuki Sakurai, Misaki Imai, Nozomi Takahashi, Atsushi Fukuda, Obata Yayoi, Shun Sato, Kazuhiko Nakabayashi, Kenichiro Hata, Yusuke Sotomaru, Yutaka Suzuki, Tomohiro Kono
Poly(ADP-Ribose) Polymerase 1 (PARP-1) Regulates Ribosomal Biogenesis in Drosophila Nucleoli
Ernest K. Boamah, Elena Kotova, Mikael Garabedian, Michael Jarnik, Alexei V. Tulin
The Yeast Complex I Equivalent NADH Dehydrogenase Rescues pink1 Mutants
Sven Vilain, Giovanni Esposito, Dominik Haddad, Onno Schaap, Mariya P. Dobreva, Melissa Vos, Stefanie Van Meensel, Vanessa A. Morais, Bart De Strooper, Patrik Verstreken
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