Many thanks to those who replied to my query about managing lab workflows.
It seems that most respondents are currently using the Big Excel
Spreadsheet method, with some groups having the spreadsheet stored "in
the cloud" i.e. as a Google Doc for safety and accessibility.
Many respondents suggested using FileMaker Pro, which is a relational
database (like Microsoft Access) that is a native Mac OS application. I
had looked at this, and also at OpenOffice.org's Base program, which is
cross-platform and open-source. Other relational databases suggested
were Bento (not familiar with it, but it is made by the same company as
FileMaker Pro, and seems like it might be a "lite" version) and Visual
Fox Pro.
Finally, a couple of dedicated solutions were suggested (and I'm not
reviewing these- just first impressions):
Lablife seems to be a web-based service with a free academic license. It
seems like a very general assistant lab manager, supporting inventory,
ordering, etc. with a few biology-specific features and cloning tools.
EarthCape (http://www.earthcape.com ) seems
like will be primarily a collection/accesssion management tool and not
specifically oriented toward dealing with genetic data and workflows,
though it may have some functionality for this.
Finally, the Moorea Biocode LIMS /(Laboratory Information Management)/
Software (http://software.mooreabiocode.org) is an add-on to the
Geneious program which tracks samples and sequencing experiments within
Geneious.
None of our students have had any experience with relational databases,
and while some of these programs may be easier to learn & use than MS
Access, it is a lot to ask of students when they are also trying to
learn PCR & sequencing, etc. The Biocode LIMS looks very slick, and may
be exactly what we need since our lab uses Geneious anyway.
Thanks again to all who responded!
Norm
--
Norman A. Douglas
Postdoctoral Research Associate
Oberlin College
Biology Department
Science Center K107
119 Woodland St.
Oberlin, OH 44074-1097
(440) 775-6277
norm.douglas@oberlin.edu
Norman Douglas