Dear colleagues,

There are two slots available for the course "Manipulation of NGS Data 
for Genomic and Population Genetics Analyses" - 5th edition

Schedule: Online live sessions 5th, 7th, 12th, 13th, and 14th of June, 
2024; from 13:00 to 17:00 (Madrid time zone).

Instructors: Dr. François Sab [1]ot [1] (Institute of Research for 
Development, France) and Julie [2] Orjuela (Institute of Research for 
Development, France)

More information and registration: 
https://www.transmittingscience.com/courses/genetics-and-genomics/manipulation-ngs-data-genomic-population-genetics-analyses/

Course programme:

  	* Introduction to NGS sequencing platforms.
  	* Introduction to basic command lines.
         * Basic raw data manipulations (counting sequences,
           listing files).
         * Raw data QC & Cleaning.
         * Introduction to TOGGLe, a NGS pipeline framework.
         * Mapping: principle, tools, execution.
         * Mapping: cleaning, data control, realigning, duplicates
           marking.
         * SNP calling: raw calling, cleaning calling, filtering.
         * VCF manipulations: filtering on MAF, heterozygosity…
         * Impact of SNPs on genes.
         * Population genomics using sNMF.
         * Context-based analyses.
         * Piping large scale analyses for multiple samples using TOGGLe.
         * Testing new tools and different conditions to answer different
           biological questions.
         * Questions.

With best wishes

Sole

Soledad De Esteban-Trivigno, PhD
Transmitting Science
www.transmittingscience.com

Twitter @SoleDeEsteban
Orcid: https://orcid.org/0000-0002-2049-0890

Under the provisions of current regulations on the protection of 
personal data, Regulation (EU) 2016/679 of 27 April 2016 (GDPR), we 
inform you that personal data and email address, collected from the data 
subject will be used by TRANSMITTING SCIENCE SL to manage communications 
through email and properly manage the professional relationship with 
you. The data are obtained based on a contractual relationship or the 
legitimate interest of the Responsible, likewise the data will be kept 
as long as there is a mutual interest for it. The data will not be 
communicated to third parties, except for legal obligations. We inform 
you that you can request detailed information on the processing as well 
as exercise your rights of access, rectification, portability and 
deletion of your data and those of limitation and opposition to its 
treatment by contacting Calle Gardenia, 2 Urb. Can Claramunt de Piera 
CP: 08784 (Barcelona) or sending an email to 
info@transmittingscience.com or 
http://transmittingscience.com/additional-terms. If you consider that 
the processing does not comply with current legislation, you can 
complain with the supervisory authority at www. aepd.es .
Confidentiality. - The content of this communication, as well as that of 
all the attached documentation, is confidential and is addressed to the 
addressee. If you are not the recipient, we request that you indicate 
this to us and do not communicate its contents to third parties, 
proceeding to its destruction.
  Disclaimer of liability. - The sending of this communication does not 
imply any obligation on the part of the sender to control the absence of 
viruses, worms, Trojan horses and/or any other harmful computer program, 
and it corresponds to the recipient to have the necessary hardware and 
software tools to guarantee both the security of its information system 
and the detection and elimination of harmful computer programs. 
TRANSMITTING SCIENCE SL shall not be liable.

Links:

[1] https://www.transmittingscience.com/instructors/francois-sabot/
[2] 
https://www.transmittingscience.com/instructors/christine-tranchant-dubreuil/

Soledad De Esteban-Trivigno <soledad.esteban@transmittingscience.com>

(to subscribe/unsubscribe the EvolDir send mail to
golding@mcmaster.ca<mailto:golding@mcmaster.ca>)