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Volume 14, Issue 6, June 2024
What is a B chromosome? Early definitions revisited
Reconsideration of how to define B chromosomes led to a central characteristic that unites these selfish genetic elements: they are non-essential for the organism. Other characteristics vary among different B chromosomes.
The pattern of genetic variability in a core collection of 2,021 cowpea accessions
Cowpea is a drought-tolerant legume native to Africa with significant potential for bolstering sustainable agriculture. Fiscus et al. studied the genetic variation of a global collection of cowpea originating from 85 countries across 6 continents. The authors show that cowpea germplasm is strongly differentiated by geography, with two major subpopulations originating in North and West Africa and East and South Africa, respectively. They also used the collection to map the genetic basis of agronomically important traits such as seed pigmentation patterning and color.
Identification of X chromatin is modulated by complementary pathways in Drosophila melanogaster
Estimating between-country migration in pneumococcal populations
Whole-genome assembly of a hybrid Trypanosoma cruzi strain assembled with Nanopore sequencing alone
The landscape and predicted roles of structural variants in Fusarium graminearum genomes
Detection of rare variants among nuclei populating the arbuscular mycorrhizal fungal model species Rhizophagus irregularis DAOM197198
A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
Sse1, Hsp110 chaperone of yeast, controls the cellular fate during endoplasmic reticulum stress
A long-read draft assembly of the Chinese mantis (Mantodea: Mantidae: Tenodera sinensis) genome reveals patterns of ion channel gain and loss across Arthropoda
A chromosome-level genome assembly of the Asian house martin implies potential genes associated with the feathered-foot trait
Temporal challenges in detecting balancing selection from population genomic data
This study uses simulations to quantify the statistical power underlying common approaches to detect balancing selection. Soni and Jensen find that allele frequency-based methods are underpowered unless stable balancing selection is occurring for considerable timespans, whilst linkage disequilibrium-based patterns have power immediately upon the introduction of the balanced allele, though this power dissipates rapidly. Finally, the authors highlight various other processes that may mimic the signal of balancing selection, outlining current best practices for assessing the contributions of these various evolutionary forces.
Improved reference quality genome sequence of the plastic-degrading greater wax moth, Galleria mellonella
The greater wax moth, Galleria mellonella, has recently garnered interest as an organism capable of plastic degradation. In this work, Young et al. have assembled a high quality genome for the greater wax moth to uncover the key enzymes housed in the larvae of these insects. Using their assembly, the authors have identified several candidate plastic-degrading proteins.
A de novo genome assembly of Solanum bulbocastanum Dun., a Mexican diploid species reproductively isolated from the A-genome species, including cultivated potatoes
Identification of different classes of genome instability suppressor genes through analysis of DNA damage response markers
Robustness in population-structure and demographic-inference results derived from the Aedes aegypti genotyping chip and whole-genome sequencing data
A naturally occurring canine model of syndromic congenital microphthalmia
A high-quality genome of the convergent lady beetle, Hippodamia convergens
Analysis of nondegradable cyclins reveals distinct roles of the mitotic cyclins in Drosophila meiosis
A nox2/cybb zebrafish mutant with defective myeloid cell reactive oxygen species production displays normal initial neutrophil recruitment to sterile tail injuries
A reference quality genome assembly for the jewel scarab Chrysina gloriosa
Correction to: A genome sequence for the threatened whitebark pine
Modulators of MAPK pathway activity during filamentous growth in Saccharomyces cerevisiae
Editorial
The micromammals
In this editorial, Senior Editor Susan Forsburg examines the reasons to keep studying eukaryotic microbes like S. pombe and S. cerevisiae—and other yeasts, algae, amoeba, and fungi—even as genetic and genomic technologies now allow manipulation and study of practically any organism. She explores the challenges and opportunities of working in these tiny organisms, pointing to the substantial biology their study has uncovered.