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Current Issue of Genome Research
Table of Contents — March 2024, 34 (3)
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Table of Contents
March 2024; 34 (3)
Review
Select this article
A systematic review on the biochemical threshold of mitochondrial genetic variants
Karan K. Smith
,
Jesse D. Moreira
,
Callum R. Wilson
,
June O. Padera
,
Ashlee N. Lamason
,
Liying Xue
,
Deepa M. Gopal
,
David B. Flynn
,
and
Jessica L. Fetterman
Genome Res.
March 2024
34
:
341
-
365
;
Published in Advance
April 16, 2024
,
doi:
10.1101/gr.278200.123
Abstract
Full Text
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Supplemental Material
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Research
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Inference of selective forces on house mouse genomes during secondary contact in East Asia
Kazumichi Fujiwara
,
Shunpei Kubo
,
Toshinori Endo
,
Toyoyuki Takada
,
Toshihiko Shiroishi
,
Hitoshi Suzuki
,
and
Naoki Osada
Genome Res.
March 2024
34
:
366
-
375
;
Published in Advance
March 20, 2024
,
doi:
10.1101/gr.278828.123
Abstract
Full Text
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Supplemental Material
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Select this article
Systematic identification and characterization of exon–intron circRNAs
Yinchun Zhong
,
Yan Yang
,
Xiaolin Wang
,
Bingbing Ren
,
Xueren Wang
,
Ge Shan
,
and
Liang Chen
Genome Res.
March 2024
34
:
376
-
393
;
Published in Advance
April 12, 2024
,
doi:
10.1101/gr.278590.123
Abstract
Full Text
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Supplemental Material
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Translation-dependent and -independent mRNA decay occur through mutually exclusive pathways defined by ribosome density during T cell activation
Blandine C. Mercier
,
Emmanuel Labaronne
,
David Cluet
,
Laura Guiguettaz
,
Nicolas Fontrodona
,
Alicia Bicknell
,
Antoine Corbin
,
Mélanie Wencker
,
Fabien Aube
,
Laurent Modolo
,
Karina Jouravleva
,
Didier Auboeuf
,
Melissa J. Moore
,
and
Emiliano P. Ricci
Genome Res.
March 2024
34
:
394
-
409
;
Published in Advance
March 20, 2024
,
doi:
10.1101/gr.277863.123
Abstract
Full Text
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Supplemental Material
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Select this article
Experimentally evolving
Drosophila erecta
populations may fail to establish an effective piRNA-based host defense against invading
P
-elements
Divya Selvaraju
,
Filip Wierzbicki
,
and
Robert Kofler
Genome Res.
March 2024
34
:
410
-
425
;
Published in Advance
March 15, 2024
,
doi:
10.1101/gr.278706.123
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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Select this article
Extreme genome scrambling in marine planktonic
Oikopleura dioica
cryptic species
Charles Plessy
,
Michael J. Mansfield
,
Aleksandra Bliznina
,
Aki Masunaga
,
Charlotte West
,
Yongkai Tan
,
Andrew W. Liu
,
Jan Grašič
,
María Sara del Río Pisula
,
Gaspar Sánchez-Serna
,
Marc Fabrega-Torrus
,
Alfonso Ferrández-Roldán
,
Vittoria Roncalli
,
Pavla Navratilova
,
Eric M. Thompson
,
Takeshi Onuma
,
Hiroki Nishida
,
Cristian Cañestro
,
and
Nicholas M. Luscombe
Genome Res.
March 2024
34
:
426
-
440
;
Published in Advance
April 15, 2024
,
doi:
10.1101/gr.278295.123
Abstract
Full Text
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Supplemental Material
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Ancestral aneuploidy and stable chromosomal duplication resulting in differential genome structure and gene expression control in trypanosomatid parasites
João L. Reis-Cunha
,
Samuel A. Pimenta-Carvalho
,
Laila V. Almeida
,
Anderson Coqueiro-dos-Santos
,
Catarina A. Marques
,
Jennifer A. Black
,
Jeziel Damasceno
,
Richard McCulloch
,
Daniella C. Bartholomeu
,
and
Daniel C. Jeffares
Genome Res.
March 2024
34
:
441
-
453
;
Published in Advance
April 11, 2024
,
doi:
10.1101/gr.278550.123
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
Methods
Select this article
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
Ryan Lorig-Roach
,
Melissa Meredith
,
Jean Monlong
,
Miten Jain
,
Hugh E. Olsen
,
Brandy McNulty
,
David Porubsky
,
Tessa G. Montague
,
Julian K. Lucas
,
Chris Condon
,
Jordan M. Eizenga
,
Sissel Juul
,
Sean K. McKenzie
,
Sara E. Simmonds
,
Jimin Park
,
Mobin Asri
,
Sergey Koren
,
Evan E. Eichler
,
Richard Axel
,
Bruce Martin
,
Paolo Carnevali
,
Karen H. Miga
,
and
Benedict Paten
Genome Res.
March 2024
34
:
454
-
468
;
Published in Advance
April 16, 2024
,
doi:
10.1101/gr.278268.123
Abstract
Full Text
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Supplemental Material
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Robust chromatin state annotation
Mehdi Foroozandeh Shahraki
,
Marjan Farahbod
,
and
Maxwell W. Libbrecht
Genome Res.
March 2024
34
:
469
-
483
;
Published in Advance
March 21, 2024
,
doi:
10.1101/gr.278343.123
Abstract
Full Text
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OPEN ACCESS ARTICLE
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Systematic mapping of TF-mediated cell fate changes by a pooled induction coupled with scRNA-seq and multi-omics approaches
Muyoung Lee
,
Qingqing Guo
,
Mijeong Kim
,
Joonhyuk Choi
,
Alia Segura
,
Alper Genceroglu
,
Lucy LeBlanc
,
Nereida Ramirez
,
Yu Jin Jang
,
Yeejin Jang
,
Bum-Kyu Lee
,
Edward M. Marcotte
,
and
Jonghwan Kim
Genome Res.
March 2024
34
:
484
-
497
;
Published in Advance
April 5, 2024
,
doi:
10.1101/gr.277926.123
Abstract
Full Text
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Resource
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The genome of the colonial hydroid
Hydractinia
reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals
Christine E. Schnitzler
,
E. Sally Chang
,
Justin Waletich
,
Gonzalo Quiroga-Artigas
,
Wai Yee Wong
,
Anh-Dao Nguyen
,
Sofia N. Barreira
,
Liam B. Doonan
,
Paul Gonzalez
,
Sergey Koren
,
James M. Gahan
,
Steven M. Sanders
,
Brian Bradshaw
,
Timothy Q. DuBuc
,
Febrimarsa
,
Danielle de Jong
,
Eric P. Nawrocki
,
Alexandra Larson
,
Samantha Klasfeld
,
Sebastian G. Gornik
,
R. Travis Moreland
,
Tyra G. Wolfsberg
,
Adam M. Phillippy
,
James C. Mullikin
,
Oleg Simakov
,
Paulyn Cartwright
,
Matthew Nicotra
,
Uri Frank
,
and
Andreas D. Baxevanis
Genome Res.
March 2024
34
:
498
-
513
;
Published in Advance
March 20, 2024
,
doi:
10.1101/gr.278382.123
Abstract
Full Text
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Corrigendum
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Corrigendum: A statistical learning method for simultaneous copy number estimation and subclone clustering with single-cell sequencing data
Fei Qin
,
Guoshuai Cai
,
Christopher I. Amos
,
and
Feifei Xiao
Genome Res.
March 2024
34
:
514
;
doi:
10.1101/gr.279293.124
Extract
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This Issue
March 2024;
34
(3)
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Review
Research
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Current Issue
March 2024, 34 (3)
From the Cover
Translation-dependent mRNA decay in T cells
P
-element invasions in
Drosophila erecta
Exon–intron circRNAs
Extreme genome scrambling in
Oikopleura dioica
Cell fate conversion mapping
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