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Current Issue of Genome Research

Table of Contents — January 2026, 36 (1)

Table of Contents

January 2026; 36 (1)

Review

  • The superpowers of imprinting control regions

    • Bertille Montibus,
    • Franck Court,
    • and Philippe Arnaud
    Genome Res. January 2026 36: 1-19; Published in Advance December 10, 2025, doi:10.1101/gr.281215.125

Research

  • Loss of multilevel 3D genome organization during breast cancer progression

    • Roberto Rossini,
    • Saleh Oshaghi,
    • Maxim Nekrasov,
    • Aurélie Bellanger,
    • Renae Domaschenz,
    • Yasmin Dijkwel,
    • Mohamed Abdelhalim,
    • Rahul Agrawal,
    • Marit Ledsaak,
    • Philippe Collas,
    • Ragnhild Eskeland,
    • David Tremethick,
    • and Jonas Paulsen
    Genome Res. January 2026 36: 20-37; Published in Advance October 9, 2025, doi:10.1101/gr.280791.125

  • Epigenetic and evolutionary features of ape subterminal heterochromatin

    • DongAhn Yoo,
    • Katherine M. Munson,
    • and Evan E. Eichler
    Genome Res. January 2026 36: 38-49; Published in Advance October 22, 2025, doi:10.1101/gr.280987.125
    OPEN ACCESS ARTICLE

  • Modest increase in the de novo single-nucleotide mutation rate in house mice born by assisted reproduction

    • Laura Blanco-Berdugo,
    • Alexis Garretson,
    • and Beth L. Dumont
    Genome Res. January 2026 36: 50-60; Published in Advance November 13, 2025, doi:10.1101/gr.281180.125

  • Dynamic metabolic and molecular changes during seasonal shrinking in Sorex araneus

    • William R. Thomas,
    • Cecilia Baldoni,
    • Yuanyuan Zeng,
    • David Carlson,
    • Julie Holm-Jacobsen,
    • Marion Muturi,
    • Dominik von Elverfeldt,
    • Tue B. Bennike,
    • Dina K.N. Dechmann,
    • John Nieland,
    • Angelique P. Corthals,
    • and Liliana M. Dávalos
    Genome Res. January 2026 36: 61-70; Published in Advance November 4, 2025, doi:10.1101/gr.280639.125
    OPEN ACCESS ARTICLE

  • Strong bias in long-read sequencing prevents assembly of Drosophila melanogaster Y-linked genes

    • A. Bernardo Carvalho,
    • Bernard Y. Kim,
    • and Fabiana Uno
    Genome Res. January 2026 36: 71-82; Published in Advance October 1, 2025, doi:10.1101/gr.280604.125

  • Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells

    • Jennifer A. Urban,
    • Daniel Ringwalt,
    • John M. Urban,
    • Wingel Xue,
    • Ryan Gleason,
    • Keji Zhao,
    • and Xin Chen
    Genome Res. January 2026 36: 83-101; Published in Advance December 10, 2025, doi:10.1101/gr.280809.125
    OPEN ACCESS ARTICLE

  • Polycomb misregulation in enterocytes drives tissue decline in the aging Drosophila intestine

    • Sarah M. Leichter,
    • Kami Ahmad,
    • and Steven Henikoff
    Genome Res. January 2026 36: 102-114; Published in Advance November 17, 2025, doi:10.1101/gr.281058.125
    OPEN ACCESS ARTICLE

  • Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal chromatin-mediated mechanisms of transcriptional regulation

    • Kevin Moyung,
    • Yulong Li,
    • Heather K. MacAlpine,
    • Alexander J. Hartemink,
    • and David M. MacAlpine
    Genome Res. January 2026 36: 115-128; Published in Advance December 9, 2025, doi:10.1101/gr.279637.124

Methods

  • Automated chromatin profiling with spa-ChIP-seq uncovers the impacts of condition variations

    • Yuwei Cao,
    • Lauren Patel,
    • Lauren Alcoser,
    • Eric Mendenhall,
    • Christopher Benner,
    • Sven Heinz,
    • and Alon Goren
    Genome Res. January 2026 36: 129-141; Published in Advance December 12, 2025, doi:10.1101/gr.281320.125

  • Recovering gene regulatory networks in single-cell multi-omics data with PRISM-GRN

    • Wenhao Zhang,
    • Lan Cao,
    • Xiaoxuan Gu,
    • Yongyu Long,
    • and Ying Wang
    Genome Res. January 2026 36: 142-158; Published in Advance October 9, 2025, doi:10.1101/gr.280757.125

  • Statistically rigorous and computationally efficient chromatin stripe detection with Quagga

    • Fan Feng,
    • Sean Moran,
    • Anders S. Hansen,
    • Xiaotian Zhang,
    • and Jie Liu
    Genome Res. January 2026 36: 159-168; Published in Advance November 12, 2025, doi:10.1101/gr.280132.124
    OPEN ACCESS ARTICLE

  • A versatile type VI CRISPR-based approach for targeted m6A demethylation in mRNAs

    • Panagiotis G. Adamopoulos,
    • Konstantina Athanasopoulou,
    • and Andreas Scorilas
    Genome Res. January 2026 36: 169-182; Published in Advance December 11, 2025, doi:10.1101/gr.280476.125

  • Genome-wide maps of CPD deamination in yeast reveal the impact of DNA sequence context and nucleosome architecture on cytosine deamination rates

    • Marian F. Laughery,
    • Bastian Stark,
    • Benjamin Morledge-Hampton,
    • Steven A. Roberts,
    • and John J. Wyrick
    Genome Res. January 2026 36: 183-196; Published in Advance December 9, 2025, doi:10.1101/gr.280384.124
    OPEN ACCESS ARTICLE

  • Integration of high-throughput proteomic data and complementary omics layers with PriOmics

    • Robin Kosch,
    • Katharina Limm,
    • Annette M. Staiger,
    • Nadine S. Kurz,
    • Nicole Seifert,
    • Bence Oláh,
    • Stefan Solbrig,
    • Viola Poeschel,
    • Gerhard Held,
    • Marita Ziepert,
    • Norbert Schmitz,
    • Emil Chteinberg,
    • Reiner Siebert,
    • Rainer Spang,
    • Helena U. Zacharias,
    • German Ott,
    • Peter J. Oefner,
    • and Michael Altenbuchinger
    Genome Res. January 2026 36: 197-213; Published in Advance November 18, 2025, doi:10.1101/gr.279487.124

  • Predicted protein 3D structures provide essential insights into the genetic architecture underlying phenotypic diversity in maize

    • Shuai Wang,
    • Merritt Khaipho-Burch,
    • Lynn C. Johnson,
    • Zachary R. Miller,
    • Peter J. Bradbury,
    • Doug Speed,
    • William J. Allen,
    • M. Cinta Romay,
    • Jiquan Xue,
    • Edward S. Buckler,
    • Guillaume P. Ramstein,
    • and Baoxing Song
    Genome Res. January 2026 36: 214-225; Published in Advance October 31, 2025, doi:10.1101/gr.280514.125

Resource

  • The PanOryza pangene catalog of Asian cultivated rice

    • Bruno Contreras-Moreira,
    • Eshan Sharma,
    • Shradha Saraf,
    • Guy Naamati,
    • Parul Gupta,
    • Justin Elser,
    • Dmytro Chebotarov,
    • Kapeel Chougule,
    • Zhenyuan Lu,
    • Sharon Wei,
    • Andrew Olson,
    • Ian Tsang,
    • Disha Lodha,
    • Yong Zhou,
    • Zhichao Yu,
    • Wen Zhao,
    • Jianwei Zhang,
    • Sandeep Amberkar,
    • Kawinnat Sue-Ob,
    • Zhi Sun,
    • Maria Martin,
    • Kenneth L. McNally,
    • Doreen Ware,
    • Eric W. Deutsch,
    • Dario Copetti,
    • Rod A. Wing,
    • Pankaj Jaiswal,
    • Sarah Dyer,
    • and Andrew R. Jones
    Genome Res. January 2026 36: 226-238; Published in Advance December 12, 2025, doi:10.1101/gr.280790.125
    OPEN ACCESS ARTICLE

This Issue

January 2026; 36 (1)
Cover
  1. Review
  2. Research
  3. Methods
  4. Resource

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