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Current Issue of Genome Research

Table of Contents — August 2024, 34 (8)

Table of Contents

August 2024; 34 (8)

Research

  • Widespread natural selection on metabolite levels in humans

    • Yanina Timasheva,
    • Kaido Lepik,
    • Orsolya Liska,
    • Balázs Papp,
    • and Zoltán Kutalik
    Genome Res. August 2024 34: 1121-1129; Published in Advance August 16, 2024, doi:10.1101/gr.278756.123
    OPEN ACCESS ARTICLE

  • Genome-wide patterns of selection–drift variation strongly associate with organismal traits across the green plant lineage

    • Kavitha Uthanumallian,
    • Andrea Del Cortona,
    • Susana M. Coelho,
    • Olivier De Clerck,
    • Sebastian Duchene,
    • and Heroen Verbruggen
    Genome Res. August 2024 34: 1130-1139; Published in Advance August 29, 2024, doi:10.1101/gr.279002.124
    OPEN ACCESS ARTICLE

  • Differences in activity and stability drive transposable element variation in tropical and temperate maize

    • Shujun Ou,
    • Armin Scheben,
    • Tyler Collins,
    • Yinjie Qiu,
    • Arun S. Seetharam,
    • Claire C. Menard,
    • Nancy Manchanda,
    • Jonathan I. Gent,
    • Michael C. Schatz,
    • Sarah N. Anderson,
    • Matthew B. Hufford,
    • and Candice N. Hirsch
    Genome Res. August 2024 34: 1140-1153; Published in Advance September 9, 2024, doi:10.1101/gr.278131.123

  • Colibactin leads to a bacteria-specific mutation pattern and self-inflicted DNA damage

    • Emily Lowry,
    • Yiqing Wang,
    • Tal Dagan,
    • and Amir Mitchell
    Genome Res. August 2024 34: 1154-1164; Published in Advance August 16, 2024, doi:10.1101/gr.279517.124
    OPEN ACCESS ARTICLE

Methods

  • A simple method for finding related sequences by adding probabilities of alternative alignments

    • Martin C. Frith
    Genome Res. August 2024 34: 1165-1173; Published in Advance August 16, 2024, doi:10.1101/gr.279464.124

  • A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data

    • Siyuan Chen,
    • Jiuming Wang,
    • Inkyung Jung,
    • Zhaowen Qiu,
    • Xin Gao,
    • and Yu Li
    Genome Res. August 2024 34: 1174-1184; Published in Advance August 13, 2024, doi:10.1101/gr.279274.124
    OPEN ACCESS ARTICLE

  • A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma

    • Jan Müller,
    • Christina Hartwig,
    • Mirko Sonntag,
    • Lisa Bitzer,
    • Christopher Adelmann,
    • Yevhen Vainshtein,
    • Karolina Glanz,
    • Sebastian O. Decker,
    • Thorsten Brenner,
    • Georg F. Weber,
    • Arndt von Haeseler,
    • and Kai Sohn
    Genome Res. August 2024 34: 1185-1195; Published in Advance September 13, 2024, doi:10.1101/gr.279326.124
    OPEN ACCESS ARTICLE

  • Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

    • Matthew Wiens,
    • Hossein Farahani,
    • R. Wilder Scott,
    • T. Michael Underhill,
    • and Ali Bashashati
    Genome Res. August 2024 34: 1196-1210; Published in Advance August 15, 2024, doi:10.1101/gr.277066.122

  • Genetic complexity of killer-cell immunoglobulin-like receptor genes in human pangenome assemblies

    • Tsung-Kai Hung,
    • Wan-Chi Liu,
    • Sheng-Kai Lai,
    • Hui-Wen Chuang,
    • Yi-Che Lee,
    • Hong-Ye Lin,
    • Chia-Lang Hsu,
    • Chien-Yu Chen,
    • Ya-Chien Yang,
    • Jacob Shujui Hsu,
    • and Pei-Lung Chen
    Genome Res. August 2024 34: 1211-1223; Published in Advance September 9, 2024, doi:10.1101/gr.278358.123
    OPEN ACCESS ARTICLE

Resources

  • Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

    • Ashlyn G. Anderson,
    • Belle A. Moyers,
    • Jacob M. Loupe,
    • Ivan Rodriguez-Nunez,
    • Stephanie A. Felker,
    • James M.J. Lawlor,
    • William E. Bunney,
    • Blynn G. Bunney,
    • Preston M. Cartagena,
    • Adolfo Sequeira,
    • Stanley J. Watson,
    • Huda Akil,
    • Eric M. Mendenhall,
    • Gregory M. Cooper,
    • and Richard M. Myers
    Genome Res. August 2024 34: 1224-1234; Published in Advance August 16, 2024, doi:10.1101/gr.278601.123

  • A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types

    • Felicia Peng,
    • C. Erik Nordgren,
    • and John Isaac Murray
    Genome Res. August 2024 34: 1235-1252; Published in Advance August 14, 2024, doi:10.1101/gr.278980.124

  • Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize

    • Laura E. Tibbs-Cortes,
    • Tingting Guo,
    • Carson M. Andorf,
    • Xianran Li,
    • and Jianming Yu
    Genome Res. August 2024 34: 1253-1263; Published in Advance September 13, 2024, doi:10.1101/gr.279027.124
    OPEN ACCESS ARTICLE
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This Issue

August 2024; 34 (8)
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  1. Research
  2. Methods
  3. Resources

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