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Current Issue of Genome Research

Table of Contents — July 2024, 34 (7)

Table of Contents

July 2024; 34 (7)

Research

  • The Chinese longsnout catfish genome provides novel insights into the feeding preference and corresponding metabolic strategy of carnivores

    • Yulong Liu,
    • Gang Zhai,
    • Jingzhi Su,
    • Yulong Gong,
    • Bingyuan Yang,
    • Qisheng Lu,
    • Longwei Xi,
    • Yutong Zheng,
    • Jingyue Cao,
    • Haokun Liu,
    • Junyan Jin,
    • Zhimin Zhang,
    • Yunxia Yang,
    • Xiaoming Zhu,
    • Zhongwei Wang,
    • Gaorui Gong,
    • Jie Mei,
    • Zhan Yin,
    • Rodolphe E. Gozlan,
    • Shouqi Xie,
    • and Dong Han
    Genome Res. July 2024 34: 981-996; Published in Advance August 9, 2024, doi:10.1101/gr.278476.123
    OPEN ACCESS ARTICLE

  • The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution

    • Xinghua Li,
    • Judith E. Mank,
    • and Liping Ban
    Genome Res. July 2024 34: 997-1007; Published in Advance August 5, 2024, doi:10.1101/gr.278794.123

Methods

  • High-fidelity, large-scale targeted profiling of microsatellites

    • Caitlin A. Loh,
    • Danielle A. Shields,
    • Adam Schwing,
    • and Gilad D. Evrony
    Genome Res. July 2024 34: 1008-1026; Published in Advance July 16, 2024, doi:10.1101/gr.278785.123

  • CodonBERT large language model for mRNA vaccines

    • Sizhen Li,
    • Saeed Moayedpour,
    • Ruijiang Li,
    • Michael Bailey,
    • Saleh Riahi,
    • Lorenzo Kogler-Anele,
    • Milad Miladi,
    • Jacob Miner,
    • Fabien Pertuy,
    • Dinghai Zheng,
    • Jun Wang,
    • Akshay Balsubramani,
    • Khang Tran,
    • Minnie Zacharia,
    • Monica Wu,
    • Xiaobo Gu,
    • Ryan Clinton,
    • Carla Asquith,
    • Joseph Skaleski,
    • Lianne Boeglin,
    • Sudha Chivukula,
    • Anusha Dias,
    • Tod Strugnell,
    • Fernando Ulloa Montoya,
    • Vikram Agarwal,
    • Ziv Bar-Joseph,
    • and Sven Jager
    Genome Res. July 2024 34: 1027-1035; Published in Advance July 1, 2024, doi:10.1101/gr.278870.123

  • A gene regulatory network–aware graph learning method for cell identity annotation in single-cell RNA-seq data

    • Mengyuan Zhao,
    • Jiawei Li,
    • Xiaoyi Liu,
    • Ke Ma,
    • Jijun Tang,
    • and Fei Guo
    Genome Res. July 2024 34: 1036-1051; Published in Advance August 12, 2024, doi:10.1101/gr.278439.123

  • Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences

    • Chencheng Xu,
    • Suying Bao,
    • Ye Wang,
    • Wenxing Li,
    • Hao Chen,
    • Yufeng Shen,
    • Tao Jiang,
    • and Chaolin Zhang
    Genome Res. July 2024 34: 1052-1065; Published in Advance July 26, 2024, doi:10.1101/gr.279044.124
    OPEN ACCESS ARTICLE

  • Delineating yeast cleavage and polyadenylation signals using deep learning

    • Emily Kunce Stroup and
    • Zhe Ji
    Genome Res. July 2024 34: 1066-1080; Published in Advance June 24, 2024, doi:10.1101/gr.278606.123

  • Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs

    • Juri Kuronen,
    • Samuel T. Horsfield,
    • Anna K. Pöntinen,
    • Sudaraka Mallawaarachchi,
    • Sergio Arredondo-Alonso,
    • Harry Thorpe,
    • Rebecca A. Gladstone,
    • Rob J.L. Willems,
    • Stephen D. Bentley,
    • Nicholas J. Croucher,
    • Johan Pensar,
    • John A. Lees,
    • Gerry Tonkin-Hill,
    • and Jukka Corander
    Genome Res. July 2024 34: 1081-1088; Published in Advance August 12, 2024, doi:10.1101/gr.278485.123
    OPEN ACCESS ARTICLE

Resources

  • Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

    • Guanjue Xiang,
    • Xi He,
    • Belinda M. Giardine,
    • Kathryn J. Isaac,
    • Dylan J. Taylor,
    • Rajiv C. McCoy,
    • Camden Jansen,
    • Cheryl A. Keller,
    • Alexander Q. Wixom,
    • April Cockburn,
    • Amber Miller,
    • Qian Qi,
    • Yanghua He,
    • Yichao Li,
    • Jens Lichtenberg,
    • Elisabeth F. Heuston,
    • Stacie M. Anderson,
    • Jing Luan,
    • Marit W. Vermunt,
    • Feng Yue,
    • Michael E.G. Sauria,
    • Michael C. Schatz,
    • James Taylor,
    • Berthold Göttgens,
    • Jim R. Hughes,
    • Douglas R. Higgs,
    • Mitchell J. Weiss,
    • Yong Cheng,
    • Gerd A. Blobel,
    • David M. Bodine,
    • Yu Zhang,
    • Qunhua Li,
    • Shaun Mahony,
    • and Ross C. Hardison
    Genome Res. July 2024 34: 1089-1105; Published in Advance July 1, 2024, doi:10.1101/gr.277950.123
    OPEN ACCESS ARTICLE

  • Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana

    • Tom Denyer,
    • Pin-Jou Wu,
    • Kelly Colt,
    • Bradley W. Abramson,
    • Zhili Pang,
    • Pavel Solansky,
    • Allen Mamerto,
    • Tatsuya Nobori,
    • Joseph R. Ecker,
    • Eric Lam,
    • Todd P. Michael,
    • and Marja C.P. Timmermans
    Genome Res. July 2024 34: 1106-1120; Published in Advance July 1, 2024, doi:10.1101/gr.279091.124
    OPEN ACCESS ARTICLE
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This Issue

July 2024; 34 (7)
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  1. Research
  2. Methods
  3. Resources

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