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  Birth of protein-coding exons by ancient domestication of LINE-1 retrotransposon

  • Koichi Kitao,
  • Kenji Ichiyanagi,
  • and So Nakagawa

  Genome Res. June 2025 35: 1287-1300; Published in Advance May 8, 2025, doi:10.1101/gr.280007.124
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  Meta-analysis of activated neurons reveals dynamic regulation of diverse classes of alternative splicing

  • Keegan S. Krick,
  • Marissa Maroni,
  • Erica Korb,
  • Kristen W. Lynch,
  • and Elizabeth A. Heller

  Genome Res. June 2025 35: 1301-1312; Published in Advance April 24, 2025, doi:10.1101/gr.280082.124
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  Diverse evolutionary trajectories of mitocoding DNA in mammalian and avian nuclear genomes

  • Yu-Chi Chen,
  • David L.J. Vendrami,
  • Maximilian L. Huber,
  • Luisa E.Y. Handel,
  • Christopher R. Cooney,
  • Joseph I. Hoffman,
  • and Toni I. Gossmann

  Genome Res. June 2025 35: 1313-1324; Published in Advance March 31, 2025, doi:10.1101/gr.279428.124
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  Extreme heterochiasmy and high rates of sex-reversed recombination result in large yet homomorphic sex chromosomes in the Emei moustache toad

  • Siyu Xie,
  • Jun Li,
  • Wanyan Chen,
  • Lydia J.M. Fong,
  • Chunhua Huang,
  • Yan Feng,
  • Qingbo Ai,
  • Mian Zhao,
  • Judith E. Mank,
  • and Hua Wu

  Genome Res. June 2025 35: 1325-1336; Published in Advance April 24, 2025, doi:10.1101/gr.280161.124
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  Endonucleolytic cleavage is the primary mechanism of decay elicited by C. elegans nonsense-mediated mRNA decay

  • Marcus J. Viscardi,
  • Enisha Sehgal,
  • and Joshua A. Arribere

  Genome Res. June 2025 35: 1337-1348; Published in Advance May 9, 2025, doi:10.1101/gr.280046.124
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  Continuous infiltration and evolutionary trajectory of nuclear organelle DNA in Oryza

  • Chenbo Gong,
  • Yicheng Huang,
  • Mengmeng Liu,
  • Yong Zhou,
  • Yinwei Xu,
  • Nahed Mohammed,
  • Xintong Qiao,
  • Andrea Zuccolo,
  • Weibo Xie,
  • Rod A. Wing,
  • Jianwei Zhang,
  • Fei Zhou,
  • and Yongjun Lin

  Genome Res. June 2025 35: 1349-1363; Published in Advance April 25, 2025, doi:10.1101/gr.279609.124
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  Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus

  • Rita Tam,
  • Mareike Möller,
  • Runpeng Luo,
  • Zhenyan Luo,
  • Ashley Jones,
  • Sambasivam Periyannan,
  • John P. Rathjen,
  • and Benjamin Schwessinger

  Genome Res. June 2025 35: 1364-1376; Published in Advance April 11, 2025, doi:10.1101/gr.280359.124
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  Contiguous and complete assemblies of Blastocystis gut microbiome–associated protists reveal evolutionary diversification to host ecology

  • Abigail L. Lind,
  • Nathan A. McDonald,
  • Elias R. Gerrick,
  • Ami S. Bhatt,
  • and Katherine S. Pollard

  Genome Res. June 2025 35: 1377-1390; Published in Advance April 22, 2025, doi:10.1101/gr.279080.124
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