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Introducing our new "Methods" manuscript type
 
Genome Biology and Evolution has added a new manuscript type to present statistical, computational, or experimental approaches of broad interest to the evolution community. Publish with GBE today and feature work that will enhance studies of genome evolution.
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Genome Biology and Evolution  
Volume 16 Issue 8
 
August 2024
 
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Special Section: Protein Evolution Beyond Gene Duplication
 
 
 
 
Articles
 
 
 
 
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence border= 
 
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
 
 
 
De Novo Emerged Gene Search in Eukaryotes with DENSE border=  
 
Paul Roginski, Anna Grandchamp, Chloé Quignot, Anne Lopes
 
 
 
Sequence, Structure, and Functional Space of Drosophila De Novo Proteins border= 
 
Lasse Middendorf, Bharat Ravi Iyengar, Lars A Eicholt
 
 
 
Special Section: Extremophile
 
 
 
 
Article
 
 
 
 
Genetic Signatures of Positive Selection in Human Populations Adapted to High Altitude in Papua New Guinea border= 
 
Ram González-Buenfil, Sofía Vieyra-Sánchez, Consuelo D Quinto-Cortés, Stephen J Oppenheimer, William Pomat ...
 
 
 
Highlights
 
 
 
 
Highlight: From Prey to Pathogen'The Role of Predation in Driving Virulence border= 
 
Casey McGrath
 
 
 
 
 
Review
 
 
 
 
Revisiting Dominance in Population Genetics border= 
 
Chenlu Di, Kirk E Lohmueller
 
 
 
Perspective
 
 
 
 
Lessons from Extremophiles: Functional Adaptations and Genomic Innovations across the Eukaryotic Tree of Life border= 
 
H B Rappaport, Angela M Oliverio
 
 
 
Articles
 
 
 
 
Molecular Insights into the Low Complexity Secreted Venom of Calliactis polypus border= 
 
Hayden L Smith, Daniel A Broszczak, Scott E Bryan, Raymond S Norton, Peter J Prentis
 
 
 
The Structure of Simple Satellite Variation in the Human Genome and Its Correlation With Centromere Ancestry border= 
 
Iskander Said, Daniel A Barbash, Andrew G Clark
 
 
 
Differential Conservation and Loss of Chicken Repeat 1 (CR1) Retrotransposons in Squamates Reveal Lineage-Specific Genome Dynamics Across Reptiles border= 
 
Simone M Gable, Nicholas A Bushroe, Jasmine M Mendez, Adam Wilson, Brendan J Pinto ...
 
 
 
 
Transcriptomic Response to Pyrethroid Treatment in Closely Related Bed Bug Strains Varying in Resistance border= 
 
Chloé Haberkorn, Zaïnab Belgaïdi, Romain Lasseur, Fabrice Vavre, Julien Varaldi
 
 
 
Plethora of New Marsupial Genomes Informs Our Knowledge of Marsupial MHC Class II border= 
 
Luke W Silver, Carolyn J Hogg, Katherine Belov
 
 
 
Dynamic Expansions and Retinal Expression of Spectrally Distinct Short-Wavelength Opsin Genes in Sea Snakes border= 
 
Isaac H Rossetto, Alastair J Ludington, Bruno F Simões, Nguyen Van Cao, Kate L Sanders
 
 
 
Early Diversification of Membrane Intrinsic Proteins (MIPs) in Eukaryotes border=  
 
Iker Irisarri, Héctor Lorente-Martínez, Jürgen F H Strassert, Ainhoa Agorreta, Rafael Zardoya ...
 
 
 
Molecular Mechanisms of Temperature Tolerance Plasticity in an Arthropod border=  
 
Anne Aagaard, Jesper Bechsgaard, Jesper Givskov Sørensen, Tobias Sandfeld, Virginia Settepani ...
 
 
 
Genomic and Transcriptomic Insights into the Evolution of C4 Photosynthesis in Grasses 
 
Haomin Lyu, Won Cheol Yim, Qingyi Yu
 
 
 
Making a Pathogen? Evaluating the Impact of Protist Predation on the Evolution of Virulence in Serratia marcescens  border= 
 
Heather A Hopkins, Christian Lopezguerra, Meng-Jia Lau, Kasie Raymann
 
 
 
Evolution of the Genetic Code in the Ascoideales (CUG-Ser2) Yeast Clade: The Ancestral tRNA-Leu(CAG) Gene Is Retained in Most Saccharomycopsis Species but Is Nonessential and Not Used for Translation border= 
 
Eoin Ó Cinnéide, Caitriona Scaife, Eugène T Dillon, Kenneth H Wolfe
 
 
 
Selection and Gene Duplication Associated With High-Elevation Diversification in Pristimantis, the Largest Terrestrial Vertebrate Genus border= 
 
Nicholas Christodoulides, Veronica L Urgiles, Juan M Guayasamin, Anna E Savage
 
 
 
Genomic Underpinnings of Cytoplasmic Incompatibility: CIF Gene-Neighborhood Diversification Through Extensive Lateral Transfers and Recombination in Wolbachia  border= 
 
Yongjun Tan, L Aravind, Dapeng Zhang
 
 
 
Reduction of Ribosomal Expansion Segments in Yeast Species of the Magnusiomyces/Saprochaete Clade border= 
 
Filip Brázdovič, Broňa Brejová, Barbara Siváková, Peter Baráth, Filip Kerák ...
 
 
 
Draft Genome of Akame (Lates Japonicus ) Reveals Possible Genetic Mechanisms for Long-Term Persistence and Adaptive Evolution with Low Genetic Diversity border= 
 
Yasuyuki Hashiguchi, Tappei Mishina, Hirohiko Takeshima, Kouji Nakayama, Hideaki Tanoue ...
 
 
 
Accumulation of Large Lineage-Specific Repeats Coincides with Sequence Acceleration and Structural Rearrangement in Plantago Plastomes border= 
 
Jie Wang, Shenglong Kan, Jiali Kong, Liyun Nie, Weishu Fan ...
 
 
 
Mitochondrial DNA of the Demosponge Acanthella acuta : Linear Architecture and Other Unique Features border= 
 
Momin Ahmed, Ehsan Kayal, Dennis V Lavrov
 
 
 
Genome Resources
 
 
 
 
Chromosome-Scale Assembly and Annotation of Eight Arabidopsis thaliana Ecotypes border= 
 
Zachary Kileeg, Pauline Wang, G Adam Mott
 
 
 
Chromosome-Level Genome Assembly of the Viviparous Eelpout Zoarces viviparus  border= 
 
Nico Fuhrmann, Marie V Brasseur, Christina E Bakowski, Lars Podsiadlowski, Stefan Prost ...
 
 
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