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Volume 16 Issue 7
July 2024
Special Section: Protein Evolution Beyond Gene Duplication
Article
Modeling Length Changes in
De Novo
Open Reading Frames during Neutral Evolution
Marie Kristin Lebherz
,
Bharat Ravi Iyengar
,
Erich Bornberg-Bauer
Special Section: Genomics of Adaptations to Extreme Environments
Article
Pan-Genome Provides Insights into
Vibrio
Evolution and Adaptation to Deep-Sea Hydrothermal Vents
Emanuele Bosi
,
Elisa Taviani
,
Alessia Avesani
,
Lapo Doni
,
Manon Auguste
...
Special Section: De Novo Gene Evolution
Article
DNA Transposons Favor De Novo Transcript Emergence Through Enrichment of Transcription Factor Binding Motifs
Marie Kristin Lebherz
,
Bertrand Fouks
,
Julian Schmidt
,
Erich Bornberg-Bauer
,
Anna Grandchamp
Highlights
40th Anniversary Virtual Issues: Recombination and Meiosis
Casey L McGrath
Highlight: Striking Discoveries in Rattlesnake Venom Evolution
Casey McGrath
Letter
The Nitroplast and Its Relatives Support a Universal Model of Features Predicting Gene Retention in Endosymbiont and Organelle Genomes
Iain G Johnston
Articles
Expression of Truncated Products at the 5²-Terminal Region of
RIPK2
and Evolutive Aspects that Support Their Biological Importance
Ulises M M Villagra
,
Bianca R da Cunha
,
Giovana M Polachini
,
Tiago Henrique
,
Ana Carolina Buzzo Stefanini
...
High Polymorphism Levels of De Novo ORFs in a Yoruba Human Population
Covadonga Vara
,
José Carlos Montañés
,
M Mar Albà
Genomic Consequences of Isolation and Inbreeding in an Island Dingo Population
Ana V Leon-Apodaca
,
Manoharan Kumar
,
Andres del Castillo
,
Gabriel C Conroy
,
Robert W Lamont
...
Genome-Wide Gene Birth'Death Dynamics Are Associated with Diet Breadth Variation in Lepidoptera
Hanna Dort
,
Wouter van der Bijl
,
Niklas Wahlberg
,
Sören Nylin
,
Christopher W Wheat
Comparative Genomics and the Salivary Transcriptome of the Redbanded Stink Bug Shed Light on Its High Damage Potential to Soybean
Hunter K Walt
,
Jonas G King
,
Tyler B Towles
,
Seung-Joon Ahn
,
Federico G Hoffmann
Limited Parallelism in Genetic Adaptation to Brackish Water Bodies in European Sprat and Atlantic Herring
Mats E Pettersson
,
María Quintela
,
François Besnier
,
Qiaoling Deng
,
Florian Berg
...
Differential Regulation of Opsin Gene Expression in Response to Internal and External Stimuli
Julián Torres-Dowdall
,
Nidal Karagic
,
Femina Prabhukumar
,
Axel Meyer
Diverse Gene Regulatory Mechanisms Alter Rattlesnake Venom Gene Expression at Fine Evolutionary Scales
Siddharth S Gopalan
,
Blair W Perry
,
Yannick Z Francioli
,
Drew R Schield
,
Hannah D Guss
...
Using Runs of Homozygosity and Machine Learning to Disentangle Sources of Inbreeding and Infer Self-Fertilization Rates
Leo Zeitler
,
Kimberly J Gilbert
Comparative Genomic Analysis of the Pattern of Evolution of Male and Female Reproductive Proteins in Seed Beetles
Konstantinos Papachristos
,
Ahmed Sayadi
,
Göran Arnqvist
What Makes a Mimic? Orange, Red, and Black Color Production in the Mimic Poison Frog (
Ranitomeya imitator
)
Andrew O Rubio
,
Adam M M Stuckert
,
BreAnn Geralds
,
Rasmus Nielsen
,
Matthew D MacManes
...
Unanticipated Loss of Inflammasomes in Birds
Zachary P Billman
,
Dustin C Hancks
,
Edward A Miao
Patterns of Genetic Diversity and Gene Flow Associated With an Aridity Gradient in Populations of Common Mole-rats,
Cryptomys hottentotus hottentotus
Hana N Merchant
,
Anastasia Ivanova
,
Daniel W Hart
,
Cristina García
,
Nigel C Bennett
...
Molecular Dating of the Teleost Whole Genome Duplication (3R) Is Compatible With the Expectations of Delayed Rediploidization
Minbo Qi
,
James Clark
,
Edmund R R Moody
,
Davide Pisani
,
Philip C J Donoghue
Duplications and Retrogenes Are Numerous and Widespread in Modern Canine Genomic Assemblies
Anthony K Nguyen
,
Matthew S Blacksmith
,
Jeffrey M Kidd
Gene Protein Sequence Evolution Can Predict the Rapid Divergence of Ovariole Numbers in the
Drosophila melanogaster
Subgroup
Carrie A Whittle
,
Cassandra G Extavour
Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae)
Kristen A Behrens
,
Stephan Koblmueller
,
Thomas D Kocher
Genome Resources
A Chromosome-Level Genome Assembly and Annotation for the
Oecanthus rufescens
(Orthoptera: Oecanthidae)
Xuan Jing
,
Hui-Yao Zhao
,
Yan-Na Zheng
,
Yi-Meng Nie
,
Li-Bin Ma
...
Long-Read'Based Hybrid Genome Assembly and Annotation of Snow Algal Strain CCCryo 101-99 (cf.
Sphaerocystis
sp., Chlamydomonadales)
Ozan Çiftçi
,
Athanasios Zervas
,
Stefanie Lutz
,
Helen Feord
,
Christoph Keusching
...
First Chromosome-Level Genome Assembly of a Ribbon Worm from the Hoplonemertea Clade,
Emplectonema gracile
, and Its Structural Annotation
Alberto Valero-Gracia
,
Nickellaus G Roberts
,
Meghan Yap-Chiongco
,
Ana Teresa Capucho
,
Kevin M Kocot
...
Chromosome-Scale Genome Assembly for Soft-Stem Bulrush (
Schoenoplectus tabernaemontani
) Confirms a Clade-Specific Whole-Genome Duplication in Cyperaceae
Yang Li
,
Yu Ning
,
Yan Chao Zheng
,
Xuan Yu Lou
,
Zhe Pan
...
Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee
Bombus dahlbomii
Lican Martínez
,
Eduardo E Zattara
,
Marina P Arbetman
,
Carolina L Morales
,
Rick E Masonbrink
...
Chromosome-Level Reference Genome of the Ponza Grayling (
Hipparchia sbordonii
), an Italian Endemic and Endangered Butterfly
Sebastiano Fava
,
Marco Sollitto
,
Mbarsid Racaku
,
Alessio Iannucci
,
Andrea Benazzo
...
De Novo Long-Read Genome Assembly and Annotation of the Luna Moth (
Actias luna
) Fully Resolves Repeat-Rich Silk Genes
Amanda Markee
,
Rebekah Keating Godfrey
,
Paul B Frandsen
,
Yi-Ming Weng
,
Deborah A Triant
...
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