Subject: New issue: Molecular Biology and Evolution, Volume 42, Issue 7, July 2025

Volume 42, Issue 7, July 2025

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Highlights

Highlight: Cellular Environment and Protein Structure Help Organisms Cope with Temperature Stress

Pedro Andrade

Discoveries

Widespread Genetic Signals of Visual System Adaptation in Deepwater Cichlid Fishes

Julia I Camacho GarcÃa and others

Pervasive Divergence in Protein Thermostability is Mediated by Both Structural Changes and Cellular Environments

Nilima Walunjkar and others

Evolutionary Genomics Unravels the Responses and Adaptation to Climate Change in a Key Alpine Forest Tree Species

Zhiqin Long and others

Spatiotemporal Tracking of Three Novel Transposable Element Invasions in Drosophila melanogaster over the Last 30 Years

Riccardo Pianezza and others

Expression Divergence in Response to Sex-biased Selection

Karl Grieshop and others

Connectivity and Adaptation Patterns of the Deep-Sea Ground-Forming Sponge Geodia hentscheli Across Its Entire Distribution

Sergi Taboada and others

Extensive Recombination Suppression and Genetic Degeneration of a Young ZW Sex Chromosome System in Halfbeak Fish

Teng-Fei Xing and others

Dynamics of Deleterious Mutations and Purifying Selection in Small Population Isolates

Ying Chen and others

A Trade-Off between Body Mass and Cancer Resistance in Cetaceans Is Mediated by Cell Cycle-Related Gene Evolution

Linxia Sun and others

Genome-wide Parallelism Underlies Rapid Freshwater Adaptation Fueled by Standing Genetic Variation in a Wild Fish

Hao Yang and others

Nested Admixture During and After the Trans-Atlantic Slave Trade on the Island of São Tomé

Marta Ciccarella and others

Divergence of Leptin Receptor and Interleukin-6 Receptor Subunit b in Early Vertebrate Evolution and Physiological Insights from the Sea Lamprey

Ningping Gong and others

Phylogenomics Unveils the Complex Evolution of Retroviruses in Birds

Qinliu He and others

Comparative Analysis of Mammalian Adaptive Immune Loci Revealed Spectacular Divergence and Common Genetic Patterns

Mariia Pospelova and others

Compensatory Evolution Following Deleterious Episodes of GC-biased Gene Conversion in Rodents

Marie Riffis and others

Integrative Genomic, Transcriptomic and Epigenomic Analysis Reveals cis-regulatory Contributions to High-altitude Adaptation in Tibetan Pigs

Dingwang Lai and others

Host-Associated Genetic Differentiation in the Face of Ongoing Gene Flow: Ecological Speciation in a Pathogenic Parasite of Freshwater Fish

Masoud Nazarizadeh and others

Horizontal Gene Transfer Inference: Gene Presence'Absence Outperforms Gene Trees

Swastik Mishra and others

Methods

PHACE: Phylogeny-Aware Detection of Molecular Coevolution

Nurdan Kuru and others

Detecting Interspecific Positive Selection Using Convolutional Neural Networks

Charlotte West and others

Brief Communications

The Heterogametic Transition in European Bufo Toads Switches the Sex Linkage of Key Vertebrate Sex Determination Genes and Associates with a Large Sex Chromosome Effect

Christophe Dufresnes and others

Newly Developed Structure-Based Methods Do Not Outperform Standard Sequence-Based Methods for Large-Scale Phylogenomics

Giacomo Mutti and others

Society for Molecular Biology and Evolution

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