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Molecular Biology and Evolution  
Volume 41 Issue 10
 
October 2024
 
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Discoveries
 
 
 
 
Functional Characterization Supports Multiple Evolutionary Origins of Pheromone Receptors in Bark Beetles border= 
 
Twinkle Biswas, Cassie Sims, Jothi Kumar Yuvaraj, Rebecca E Roberts, Christer Löfstedt ...
 
 
 
Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants border= 
 
Caio A Leal-Dutra, Joel Vizueta, Tobias Baril, Pepijn W Kooij, Asta Rødsgaard-Jørgensen ...
 
 
 
The Human Accelerated Region HAR202 Controls NPAS3 Expression in the Developing Forebrain Displaying Differential Enhancer Activity Between Modern and Archaic Human Sequences border= 
 
Alfredo Leandro Caporale, Alejandro R Cinalli, Marcelo Rubinstein, Lucía F Franchini
 
 
 
Evolutionary Innovations in Conserved Regulatory Elements Associate With Developmental Genes in Mammals border= 
 
Severin Uebbing, Acadia A Kocher, Marybeth Baumgartner, Yu Ji, Suxia Bai ...
 
 
 
Widespread Adaptive Introgression of Major Histocompatibility Complex Genes across Vertebrate Hybrid Zones border= 
 
T Gaczorek, K Dudek, U Fritz, L Bahri-Sfar, S J E Baird ...
 
 
 
 
The Population History of Domestic Sheep Revealed by Paleogenomes border= 
 
Damla Kaptan, Gözde AtaÄŸ, Kıvılcım BaÅŸak Vural, Pedro Morell Miranda, Ali Akbaba ...
 
 
 
Maroon Rice Genomic Diversity Reflects 350 Years of Colonial History border=  
 
Marieke S van de Loosdrecht, Nicholaas M Pinas, Evanne Dongstra, Jerry R Tjoe Awie, Frank F M Becker ...
 
 
 
Tracing the Evolutionary History of the Temperature-Sensing Prion-like Domain in EARLY FLOWERING 3 Highlights the Uniqueness of At ELF3 border= 
 
Zihao Zhu, Jana Trenner, Carolin Delker, Marcel Quint
 
 
 
Toxin-Antitoxin Systems Reflect Community Interactions Through Horizontal Gene Transfer border= 
 
Jonathan H Bethke, Jeffrey Kimbrel, Yongqin Jiao, Dante Ricci
 
 
 
A Minimal Hybrid Sterility Genome Assembled by Chromosome Swapping Between Mouse Subspecies (Mus musculus ) border= 
 
Vladana Fotopulosova, Giordano Tanieli, Karel Fusek, Petr Jansa, Jiri Forejt
 
 
 
 
Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa border= 
 
Thanvi Srikant, Adrián Gonzalo, Kirsten Bomblies
 
 
 
Functional Optimization in Distinct Tissues and Conditions Constrains the Rate of Protein Evolution border= 
 
Dinara R Usmanova, Germán Plata, Dennis Vitkup
 
 
 
Machine Learning Reveals the Diversity of Human 3D Chromatin Contact Patterns border=  
 
Erin N Gilbertson, Colin M Brand, Evonne McArthur, David C Rinker, Shuzhen Kuang ...
 
 
 
Assessing the Role of Bacterial Innate and Adaptive Immunity as Barriers to Conjugative Plasmids border= 
 
Berit Siedentop, Carlota Losa Mediavilla, Roger D Kouyos, Sebastian Bonhoeffer, Hélène Chabas
 
 
 
Methods
 
 
 
 
HaploSweep: Detecting and Distinguishing Recent Soft and Hard Selective Sweeps through Haplotype Structure border= 
 
Shilei Zhao, Lianjiang Chi, Mincong Fu, Hua Chen
 
 
 
soibean : High-Resolution Taxonomic Identification of Ancient Environmental DNA Using Mitochondrial Pangenome Graphs border= 
 
Nicola Alexandra Vogel, Joshua Daniel Rubin, Anders Gorm Pedersen, Peter Wad Sackett, Mikkel Winther Pedersen ...
 
 
 
Predicting Phylogenetic Bootstrap Values via Machine Learning border=  
 
Julius Wiegert, Dimitri Höhler, Julia Haag, Alexandros Stamatakis
 
 
 
Resources
 
 
 
 
VirID: Beyond Virus Discovery'An Integrated Platform for Comprehensive RNA Virus Characterization border= 
 
Ziyue Yang, Yongtao Shan, Xue Liu, Guowei Chen, Yuanfei Pan ...
 
 
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