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Molecular Biology and Evolution  
Volume 41 Issue 9
 
September 2024
 
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Perspective
 
 
 
 
Epigenetics Research in Evolutionary Biology: Perspectives on Timescales and Mechanisms border= 
 
Soojin V Yi
 
 
 
Review
 
 
 
 
Insertions and Deletions: Computational Methods, Evolutionary Dynamics, and Biological Applications border= 
 
Benjamin D Redelings, Ian Holmes, Gerton Lunter, Tal Pupko, Maria Anisimova
 
 
 
Discoveries
 
 
 
 
Distinct Genes with Similar Functions Underlie Convergent Evolution in Myotis Bat Ecomorphs border= 
 
Ariadna E Morales, Frank T Burbrink, Marion Segall, Maria Meza, Chetan Munegowda ...
 
 
 
Comparative Genomics Supports Ecologically Induced Selection as a Putative Driver of Banded Penguin Diversification border= 
 
Fabiola León, Eduardo Pizarro, Daly Noll, Luis R Pertierra, Patricia Parker ...
 
 
 
Annelid Comparative Genomics and the Evolution of Massive Lineage-Specific Genome Rearrangement in Bilaterians border= 
 
Thomas D Lewin, Isabel Jiah-Yih Liao, Yi-Jyun Luo
 
 
 
 
Mitochondrial DNA Genomes Reveal Relaxed Purifying Selection During Human Population Expansion after the Last Glacial Maximum border= 
 
Hong-Xiang Zheng, Shi Yan, Menghan Zhang, Zhenglong Gu, Jiucun Wang ...
 
 
 
The Genetic Architecture of Recombination Rates is Polygenic and Differs Between the Sexes in Wild House Sparrows (Passer domesticus ) border= 
 
John B McAuley, Bertrand Servin, Hamish A Burnett, Cathrine Brekke, Lucy Peters ...
 
 
 
Horizontal Gene Transfer of a key Translation Factor and its Role in Polyproline Proteome Evolution border= 
 
Tess E Brewer, Andreas Wagner
 
 
 
Low Genetic Impact of the Roman Occupation of Britain in Rural Communities border=  
 
Christiana L Scheib, Ruoyun Hui, Alice K Rose, Eugenia D'Atanasio, Sarah A Inskip ...
 
 
 
Diverse Origins of Near-Identical Antifreeze Proteins in Unrelated Fish Lineages Provide Insights Into Evolutionary Mechanisms of New Gene Birth and Protein Sequence Convergence border= 
 
Nathan Rives, Vinita Lamba, C H Christina Cheng, Xuan Zhuang
 
 
 
 
Promoters Constrain Evolution of Expression Levels of Essential Genes in Escherichia coli border= 
 
Saburo Tsuru, Naoki Hatanaka, Chikara Furusawa
 
 
 
Prevalent Fast Evolution of Genes Involved in Heterochromatin Functions border=  
 
Leila Lin, Yuheng Huang, Jennifer McIntyre, Ching-Ho Chang, Serafin Colmenares ...
 
 
 
Reused Protein Segments Linked to Functional Dynamics border=  
 
YiÄŸit Kutlu, Gabriel Axel, Rachel Kolodny, Nir Ben-Tal, Turkan Haliloglu
 
 
 
Diversity in Recombination Hotspot Characteristics and Gene Structure Shape Fine-Scale Recombination Patterns in Plant Genomes border= 
 
Thomas Brazier, Sylvain Glémin
 
 
 
Most Pleiotropic Effects of Gene Knockouts Are Evolutionarily Transient in Yeasts border= 
 
Li Liu, Yao Liu, Lulu Min, Zhenzhen Zhou, Xingxing He ...
 
 
 
Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature Adaptation border= 
 
Andrea González-González, Tiffany N Batarseh, Alejandra Rodríguez-Verdugo, Brandon S Gaut
 
 
 
A Novel Expression Domain of extradenticle Underlies the Evolutionary Developmental Origin of the Chelicerate Patella border= 
 
Benjamin C Klementz, Georg Brenneis, Isaac A Hinne, Ethan M Laumer, Sophie M Neu ...
 
 
 
Evolution of the Correlated Genomic Variation Landscape Across a Divergence Continuum in the Genus Castanopsis border= 
 
Xue-Yan Chen, Biao-Feng Zhou, Yong Shi, Hui Liu, Yi-Ye Liang ...
 
 
 
Whole Genomes Inform Genetic Rescue Strategy for Montane Red Foxes in North America 
 
Cate B Quinn, Sophie Preckler-Quisquater, Michael R Buchalski, Benjamin N Sacks
 
 
 
Rapid Loss of Nutritional Symbionts in an Endemic Hawaiian Herbivore Radiation Is Associated with Plant Galling Habit border= 
 
Allison K Hansen, Jacob A Argondona, Sen Miao, Diana M Percy, Patrick H Degnan
 
 
 
The Chromosome-level Genome Provides Insights into the Evolution and Adaptation of Extreme Aggression border= 
 
Peng-Cheng Liu, Zi-Yin Wang, Mei Qi, Hao-Yuan Hu
 
 
 
The Fate of a Polygenic Phenotype Within the Genomic Landscapes of Introgression in the European Seabass Hybrid Zone border= 
 
Maeva Leitwein, Ghislain Durif, Emilie Delpuech, Pierre-Alexandre Gagnaire, Bruno Ernande ...
 
 
 
Methods
 
 
 
 
Inference of Host'Pathogen Interaction Matrices from Genome-Wide Polymorphism Data border= 
 
Hanna Märkle, Sona John, Lukas Metzger, Eleanor Barnes, Emma Hudson ...
 
 
 
A Quantitative Computational Framework for Allopolyploid Single-Cell Data Integration and Core Gene Ranking in Development border= 
 
Meiyue Wang, Zijuan Li, Haoyu Wang, Junwei Zhao, Yuyun Zhang ...
 
 
 
Resources
 
 
 
 
GTRpmix: A Linked General Time-Reversible Model for Profile Mixture Models border= 
 
Hector Banos, Thomas K F Wong, Justin Daneau, Edward Susko, Bui Quang Minh ...
 
 
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