Ten simple rules for effective research data management

Max J. Hassenstein, Klaus Jung

PLOS Computational Biology: published December 8, 2025 | https://doi.org/10.1371/journal.pcbi.1013779

Eleven quick tips for organizing a data cleaning challenge

Ireen J. Kal, Lidwien P. Smabers, Joanna von Berg, Giulia Perticari, Mette van de Meent, Denise Fokkelman, Joep Sprangers, Loïc Lannelongue, Florijn Dekkers

PLOS Computational Biology: published December 16, 2025 | https://doi.org/10.1371/journal.pcbi.1013791

Ten simple rules for running a virtual program to introduce computational biology at the high school level

Hanako Osuga, Matthew C. Chan, Katherine Brower, Liza J. Ray, Jeanne T. Chowning

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013830

Ten simple rules on how to set up an Innovation Boot Camp for exploitation of research results

Susanne Hollmann, Christiane Hollmann, Lesley Tobin de Fuentes, Sady Roberto Rodriguez, Yerko Fredes, Antonio Garcia-Moyano, Christina Rørvik, Babette Regierer

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013807

Computational modeling of rhythmic expectations: Perspectives, pitfalls, and prospects

Atser Damsma, Jonathan Cannon, Lauren K. Fink, Keith B. Doelling, Jessica A. Grahn, Henkjan Honing, Thomas Kaplan, Edward W. Large, Fleur L. Bouwer

PLOS Computational Biology: published December 10, 2025 | https://doi.org/10.1371/journal.pcbi.1013798

Integrative multi-omics framework for causal gene discovery in Long COVID

Sindy Pinero, Xiaomei Li, Lin Liu, Jiuyong Li, Sang Hong Lee, Marnie Winter, Thin Nguyen, Junpeng Zhang, Thuc Duy Le

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013725

DDGWizard: Integration of feature calculation resources for analysis and prediction of changes in protein thermostability upon point mutations

Mingkai Wang, Khaled Jumah, Qun Shao, Katarzyna Kamieniecka, Yihan Liu, Krzysztof Poterlowicz

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013783

Nucleotide context models outperform protein language models for predicting antibody affinity maturation

Mackenzie M. Johnson, Kevin Sung, Hugh K. Haddox, Ashni A. Vora, Tatsuya Araki, Gabriel D. Victora, Yun S. Song, Julia Fukuyama, Frederick A. Matsen IV

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013758

Long-read sequencing transcriptome quantification with lr-kallisto

Rebekah K. Loving, Delaney K. Sullivan, Fairlie Reese, Elisabeth Rebboah, Jasmine Sakr, Narges Rezaie, Heidi Y. Liang, Ghassan Filimban, Shimako Kawauchi, A. Sina Booeshaghi, Páll Melsted, Conrad Oakes, Diane Trout, Brian A. Williams, Grant R. MacGregor, Barbara J. Wold, Ali Mortazavi, Lior Pachter

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013692

Using evolutionary context to classify difficult protein folds

Jimin Pei, R. Dustin Schaeffer, Qian Cong, Nick V. Grishin

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013773

D3Impute: Dropout-aware discrimination, distribution-aware modeling, and density-guide imputation for scRNA-seq data

Siyi Huang, Linfeng Jiang, Ming Yi, Yuan Zhu

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013744

Attenuation of HIV severity by slightly deleterious mutations can explain the long-term trajectory of virulence evolution

Harriet Longley, Christophe Fraser, Chris Wymant, Katrina Lythgoe

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013131

A unified model library maps how neuromodulation reshapes the excitability landscape of neurons across the brain

Domenico Guarino, Ilaria Carannante, Alain Destexhe

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013765

Neural mechanisms of flexible perceptual inference

John Schwarcz, Jan Bauer, Haneen Rajabi, Gabrielle Marmur, Robert Reiner, Eran Lottem, Jonathan Kadmon

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013675

Automated registration and clustering for enhanced localization atomic force microscopy of flexible membrane proteins

Creighton M. Lisowski, Gavin M. King, Ioan Kosztin

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013277

Identification of dynamic models of microbial communities: A workflow addressing identifiability and modeling pitfalls

Ana Paredes-Vázquez, Eva Balsa-Canto, Julio R. Banga

PLOS Computational Biology: published December 1, 2025 | https://doi.org/10.1371/journal.pcbi.1013204

Do we advise as one likes? The alignment bias in social advice giving

Xitong Luo, Lei Zhang, Yafeng Pan

PLOS Computational Biology: published December 2, 2025 | https://doi.org/10.1371/journal.pcbi.1013732

Unsupervised detection and fitness estimation of emerging SARS-CoV-2 variants: Application to wastewater samples (ANRS0160)

Alexandra Lefebvre, Vincent Maréchal, Arnaud Gloaguen, The Obépine Consortium, Amaury Lambert, Yvon Maday

PLOS Computational Biology: published December 3, 2025 | https://doi.org/10.1371/journal.pcbi.1013749

Natural variants of von Willebrand factor R1205 causing von Willebrand disease with accelerated von Willebrand factor clearance: In silico docking models and energetics of the interaction with both LRP1 and GpIb A1 domain

Monica Sacco, Stefano Lancellotti, Antonietta Ferretti, Maria Basso, Leonardo Di Gennaro, Giancarlo Castaman, Raimondo De Cristofaro

PLOS Computational Biology: published December 3, 2025 | https://doi.org/10.1371/journal.pcbi.1013458

Accuracy of the Lotka-Volterra model fails in strongly coupled microbial consumer-resource systems

Michael P. Mustri, Quqiming Duan, Samraat Pawar

PLOS Computational Biology: published December 3, 2025 | https://doi.org/10.1371/journal.pcbi.1013719

Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenome

Esteban Dodero-Rojas, Angel Mendieta, Yao Fehlis, Nicholas Mayala, Vinícius G. Contessoto, José N. Onuchic

PLOS Computational Biology: published December 3, 2025 | https://doi.org/10.1371/journal.pcbi.1012326

Ohno-miRNAs: miRNA pairs derived from whole-genome duplication

Leonardo Agasso, Ivan Molineris, Michele Caselle

PLOS Computational Biology: published December 3, 2025 | https://doi.org/10.1371/journal.pcbi.1013766

Receptor dimerization enables ligand discrimination through tunable response heterogeneity

Assaf Biran, Yaron E. Antebi

PLOS Computational Biology: published December 3, 2025 | https://doi.org/10.1371/journal.pcbi.1013781

Decoupled contrastive multi-view clustering with adaptive false negative elimination for cancer subtyping

Mengxiang Lin, Rongqi Fan, Saisai Zhu, Xiaoqiang Yan, Quan Zou, Zhen Tian

PLOS Computational Biology: published December 4, 2025 | https://doi.org/10.1371/journal.pcbi.1013780

Coexistence rules for small, antagonistically interacting microbial communities

Gaurav S. Athreya, Chaitanya S. Gokhale, Prateek Verma

PLOS Computational Biology: published December 4, 2025 | https://doi.org/10.1371/journal.pcbi.1013763

Random time-shift approximation enables hierarchical Bayesian inference of mechanistic within-host viral dynamics models on large datasets

Dylan J. Morris, Lauren Kennedy, Andrew J. Black

PLOS Computational Biology: published December 4, 2025 | https://doi.org/10.1371/journal.pcbi.1013775

ARTreeFormer: A faster attention-based autoregressive model for phylogenetic inference

Tianyu Xie, Yicong Mao, Cheng Zhang

PLOS Computational Biology: published December 4, 2025 | https://doi.org/10.1371/journal.pcbi.1013768

An agent-based model of metabolic signaling oscillations in Bacillus subtilis biofilms

Obadiah J. Mulder, Maya Peters Kostman, Abdulrahmen Almodaimegh, Michael D. Edge, Joseph W. Larkin

PLOS Computational Biology: published December 4, 2025 | https://doi.org/10.1371/journal.pcbi.1013746

Verification and reproducible curation of the BioModels repository

Lucian P. Smith, Rahuman S. Malik-Sheriff, Tung V. N. Nguyen, Henning Hermjakob, Jonathan Karr, Bilal Shaikh, Logan Drescher, Ion I. Moraru, James C. Schaff, Eran Agmon, Alexander A. Patrie, Michael L. Blinov, Joseph L. Hellerstein, Elebeoba E. May, David P. Nickerson, John H. Gennari, Herbert M. Sauro

PLOS Computational Biology: published December 4, 2025 | https://doi.org/10.1371/journal.pcbi.1013239

Benchmarking interpretability of deep learning for predictive genomics: Recall, precision, and variability of feature attribution

Justin Reynolds, Chongle Pan

PLOS Computational Biology: published December 5, 2025 | https://doi.org/10.1371/journal.pcbi.1013784

Systematic computational assessment of atrial function impairment due to fibrotic remodeling in electromechanical properties

Åshild Telle, Ahmad Kassar, Nadia Chamoun, Romanos Haykal, Alejandro Gonzalo, Tori Hensley, Yaacoub Chahine, Oscar Flores, Juan C. del Álamo, Nazem Akoum, Christoph M. Augustin, Patrick M. Boyle

PLOS Computational Biology: published December 5, 2025 | https://doi.org/10.1371/journal.pcbi.1013265

Graph-enhanced deep learning for diabetic retinopathy diagnosis: A quality-aware and uncertainty-driven approach

Zarin Akter, Jawad Ibn Ahad, Md. Mutasim Farhan, Riasat Khan

PLOS Computational Biology: published December 5, 2025 | https://doi.org/10.1371/journal.pcbi.1013745

Memory, innovation and vertical learning

Madeleine Ammar, Laurel Fogarty, Anne Kandler

PLOS Computational Biology: published December 5, 2025 | https://doi.org/10.1371/journal.pcbi.1013785

Transient boosting of action potential backpropagation for few-shot temporal pattern learning

Gaston Sivori, Tomoki Fukai

PLOS Computational Biology: published December 5, 2025 | https://doi.org/10.1371/journal.pcbi.1013777

A meta-contrastive learning approach for clinical drug-drug interaction extraction from biomedical literature

Yaxun Jia, Zhu Yuan, Lian Zhu, Zuo-lin Xiang

PLOS Computational Biology: published December 5, 2025 | https://doi.org/10.1371/journal.pcbi.1013722

Observing hidden neuronal states in experiments

Dmitry Amakhin, Anton Chizhov, Guillaume Girier, Mathieu Desroches, Jan Sieber, Serafim Rodrigues

PLOS Computational Biology: published December 8, 2025 | https://doi.org/10.1371/journal.pcbi.1013748

Whom do we prefer to learn from in observational reinforcement learning?

Gota Morishita, Carsten Murawski, Nitin Yadav, Shinsuke Suzuki

PLOS Computational Biology: published December 8, 2025 | https://doi.org/10.1371/journal.pcbi.1013143

Neural encoding of biomechanically (im)possible human movements in occipitotemporal cortex

Giuseppe Marrazzo, Federico De Martino, Albert Mukovskiy, Martin A. Giese, Beatrice de Gelder

PLOS Computational Biology: published December 8, 2025 | https://doi.org/10.1371/journal.pcbi.1013694

Learning structured population models from data with WSINDy

Rainey Lyons, Vanja Dukic, David M. Bortz

PLOS Computational Biology: published December 8, 2025 | https://doi.org/10.1371/journal.pcbi.1013742

Dynamical stability and mechanical impedance are optimized when manipulating uncertain dynamically complex objects

Rakshith Lokesh, Dagmar Sternad

PLOS Computational Biology: published December 9, 2025 | https://doi.org/10.1371/journal.pcbi.1013797

Comparing a computational model of visual problem solving with human vision on a difficult vision task

Tarun Khajuria, Kadi Tulver, Jaan Aru

PLOS Computational Biology: published December 9, 2025 | https://doi.org/10.1371/journal.pcbi.1012968

Randomized Spatial PCA (RASP): A computationally efficient method for dimensionality reduction of high-resolution spatial transcriptomics data

Ian K. Gingerich, Brittany A. Goods, Hildreth Robert Frost

PLOS Computational Biology: published December 10, 2025 | https://doi.org/10.1371/journal.pcbi.1013759

Modeling the interplay of sex hormones in cardiac hypertrophic signaling

Adhithi Lakshmikanthan, Minnie Kay, Pim J.A. Oomen

PLOS Computational Biology: published December 10, 2025 | https://doi.org/10.1371/journal.pcbi.1012895

Computational characterization of the xanthan gum glycosyltransferase GumK

Davide Luciano, F. Emil Thomasen, Kresten Lindorff-Larsen, Gaston Courtade

PLOS Computational Biology: published December 10, 2025 | https://doi.org/10.1371/journal.pcbi.1013803

How cells tame noise while maintaining ultrasensitive transcriptional responses

Eui Min Jeong, Chang Yoon Chung, Jae Kyoung Kim

PLOS Computational Biology: published December 11, 2025 | https://doi.org/10.1371/journal.pcbi.1013217

Axon collateralization and focal myelin dystrophy alter action potential propagation in multicompartment pyramidal neuron models

Nilapratim Sengupta, Jennifer I. Luebke, Christina M. Weaver

PLOS Computational Biology: published December 15, 2025 | https://doi.org/10.1371/journal.pcbi.1013733

Lysergic acid diethylamide-derived excitatory/inhibitory ratio change enhances global synchrony in functional brain dynamics

Lingyu Zhang, Weiyang Shi, Ziyang Zhao, Zhichao Wang, Congying Chu, Bokai Zhao, Jiaqi Zhang, Qianhui Liu, Yueheng Lan, Tianzi Jiang

PLOS Computational Biology: published December 15, 2025 | https://doi.org/10.1371/journal.pcbi.1013822

Semi-supervised Bayesian integration of multiple spatial proteomics datasets

Stephen Coleman, Lisa Breckels, Ross F. Waller, Kathryn S. Lilley, Chris Wallace, Oliver M. Crook, Paul D. W. Kirk

PLOS Computational Biology: published December 15, 2025 | https://doi.org/10.1371/journal.pcbi.1013799

Computational origins of shape perception

Lalit Pandey, Samantha M. W. Wood, Justin N. Wood

PLOS Computational Biology: published December 15, 2025 | https://doi.org/10.1371/journal.pcbi.1013674

Predicting neural responses to intra- and extra-cranial electric brain stimulation by means of the reciprocity theorem

Torbjørn V. Ness, Christof Koch, Gaute T. Einevoll

PLOS Computational Biology: published December 15, 2025 | https://doi.org/10.1371/journal.pcbi.1013782

Sketch, capture and layout phylogenies

Daniel H. Huson

PLOS Computational Biology: published December 15, 2025 | https://doi.org/10.1371/journal.pcbi.1013805

Assessing the relative contributions of mosaic and regulatory developmental modes from single-cell trajectories

Solène Song, Paul Villoutreix

PLOS Computational Biology: published December 15, 2025 | https://doi.org/10.1371/journal.pcbi.1012352

The dynamics of explore-exploit decisions suggest a threshold mechanism for reduced random exploration in older adults

Caroline E. Phelps, Alec E. Frisvold, Meghna Sreeram, Victoria D. Antoniou, Larissa E. Oliveira, Sierra R. Tooke, Yan Z. Lu, Anna C. Lemon, Joseph U. Fraire, Alexe G. Delval, Betsy K. Smith, Devynn H. Spangenberg, Madelien N. Mithelavage, Michelle N. Ngo, Elizabeth M. O. Keller, Liliana J. Issac, Sara A. Harader, Jack-Morgan Mizell, Siyu Wang, Waitsang Keung, Mark H. Sundman, Mary-Kathryn Franchetti, Ying-hui Chou, Gene E. Alexander, Robert C. Wilson

PLOS Computational Biology: published December 16, 2025 | https://doi.org/10.1371/journal.pcbi.1012873

Blaming luck, claiming skill: Self-attribution bias in error assignment

Naoyuki Okamoto, Michael Taylor, Takatomi Kubo, Shin Ishii, Benedetto De Martino, Aurelio Cortese

PLOS Computational Biology: published December 16, 2025 | https://doi.org/10.1371/journal.pcbi.1013787

Probabilistic modeling of cell cycle dynamics in response to cell cycle targeting chemotherapy drugs to guide treatment strategies

Chenhui Ma, Evren Gurkan-Cavusoglu

PLOS Computational Biology: published December 16, 2025 | https://doi.org/10.1371/journal.pcbi.1013790

Quantifying viral pandemic potential from experimental transmission studies

Elizabeth D. Somsen, Kayla M. Septer, Cassandra J. Field, Devanshi R. Patel, Anice C. Lowen, Troy C. Sutton, Katia Koelle

PLOS Computational Biology: published December 17, 2025 | https://doi.org/10.1371/journal.pcbi.1013808

Quantifying vector diversion effects in zoonotic systems: A modelling framework for arbovirus transmission between reservoir and dead-end hosts

Emma L. Fairbanks, Matthew Baylis, Janet M. Daly, Michael J. Tildesley

PLOS Computational Biology: published December 18, 2025 | https://doi.org/10.1371/journal.pcbi.1013359

Mechanistically informed machine learning links non-canonical TCA cycle activity to Warburg metabolism and hallmarks of malignancy

Lihao Lin, Francesco Lapi, Bruno Giovanni Galuzzi, Marco Vanoni, Lilia Alberghina, Chiara Damiani

PLOS Computational Biology: published December 18, 2025 | https://doi.org/10.1371/journal.pcbi.1013384

Decoding the role of DNA sequence on protein-DNA co-condensation

Rohit Kumar Singh, Pinaki Swain, Mahipal Ganji, Sandeep Choubey

PLOS Computational Biology: published December 18, 2025 | https://doi.org/10.1371/journal.pcbi.1013829

ASPEN: Robust detection of allelic dynamics in single cell RNA-seq

Veronika Petrova, Muqing Niu, Thomas S. Vierbuchen, Emily S. Wong

PLOS Computational Biology: published December 19, 2025 | https://doi.org/10.1371/journal.pcbi.1013837

Stable individualized brain computing model informed by spatiotemporal co-activity patterns

Lan Yang, Jiayu Lu, Xinran Wu, Xi Zhang, Ting Li, Ruiyun Chang, Songjun Peng, Dandan Li, Jie Zhang, Bin Wang

PLOS Computational Biology: published December 19, 2025 | https://doi.org/10.1371/journal.pcbi.1013817

Zero-shot deep learning for the annotation of unknown eDNA sequences using co-occurrences and phylogenetic embeddings

Steven Stalder, Théophile Sanchez, Michele Volpi, Stéphanie Manel, David Mouillot, Arnaud Auber, Morgane Bruno, Virginie Marques, Camille Albouy, Loïc Pellissier

PLOS Computational Biology: published December 19, 2025 | https://doi.org/10.1371/journal.pcbi.1013776

DAGFormer: A graph-based domain adaptation approach for single-cell cancer drug response prediction

Fen Yan, ZhiHua Du, Yu-An Huang

PLOS Computational Biology: published December 19, 2025 | https://doi.org/10.1371/journal.pcbi.1013832

Long-term perceptual priors drive confidence bias that favors prior-congruent evidence

Marika Constant, Elisa Filevich, Pascal Mamassian

PLOS Computational Biology: published December 22, 2025 | https://doi.org/10.1371/journal.pcbi.1013826

Abnormal vasculature reduces overlap between drugs and oxygen in a tumour computational model: Implications for therapeutic efficacy

Romain Enjalbert, Jakub Köry, Timm Krüger, Miguel O. Bernabeu

PLOS Computational Biology: published December 22, 2025 | https://doi.org/10.1371/journal.pcbi.1013801

Neuronal identity is not static: An input-driven perspective

Nishant Joshi, Sven van Der Burg, Tansu Celikel, Fleur Zeldenrust

PLOS Computational Biology: published December 22, 2025 | https://doi.org/10.1371/journal.pcbi.1013821

V-Cornea: A computational model of corneal epithelium homeostasis, injury, and recovery

Joel Vanin, Michael Getz, Catherine Mahony, Thomas B. Knudsen, James A. Glazier

PLOS Computational Biology: published December 26, 2025 | https://doi.org/10.1371/journal.pcbi.1013410

A game theoretic treatment of contagion in trade networks

John S. McAlister, Jesse L. Brunner, Danielle J. Galvin, Nina H. Fefferman

PLOS Computational Biology: published December 26, 2025 | https://doi.org/10.1371/journal.pcbi.1013845

Interplay of structured and random interactions in complex ecosystems dynamics

Juan Giral Martínez, Matthieu Barbier, Silvia De Monte

PLOS Computational Biology: published December 26, 2025 | https://doi.org/10.1371/journal.pcbi.1013786

Modeling based insights into mechanical dysfunction in esophageal motility disorders

Guy Elisha, Sourav Halder, Xinyi Liu, Dustin A. Carlson, Peter J. Kahrilas, John E. Pandolfino, Neelesh A. Patankar

PLOS Computational Biology: published December 26, 2025 | https://doi.org/10.1371/journal.pcbi.1013778

A novel generative framework for designing pathogen-targeted antimicrobial peptides with programmable physicochemical properties

Weizhong Zhao, Kaijieyi Hou, Chang Tang, Yiting Shen, Jinlin Liu, Xiaohua Hu

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013833

Cell-DINO: Self-supervised image-based embeddings for cell fluorescent microscopy

Théo Moutakanni, Camille Couprie, Seungeun Yi, Michael Doron, Zitong S. Chen, Nikita Moshkov, Elouan Gardes, Mathilde Caron, Hugo Touvron, Armand Joulin, Piotr Bojanowski, Wolfgang M. Pernice, Juan C. Caicedo

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013828

Ion dynamics underlying the seizure delay effect of low-frequency electrical stimulation

Guillaume Girier, Isa Dallmer-Zerbe, Jan Chvojka, Jan Kudlacek, Premysl Jiruska, Jaroslav Hlinka, Helmut Schmidt

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013838

Modeling tissue-scale ciliary transport and mixing in three-dimensional Newtonian flow

Ling Xu, Pejman Senaei, Yi Jiang

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1012766

A data-driven biology-based network model reproduces C. elegans premotor neural dynamics

Megan Morrison, Lai-Sang Young

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013818

Using artificial neural networks to reveal the human confidence computation

Medha Shekhar, Herrick Fung, Krish Saxena, Farshad Rafiei, Dobromir Rahnev

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013827

A computational framework to study EGFR signaling distribution in egg chambers during dynamic interactions between soma and germline

Nastassia Pouradier Duteil, Nicole T. Revaitis, Mathew G. Niepielko, Eric A. Klein, Nir Yakoby, Benedetto Piccoli

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013802

Gaussian process emulation for exploring complex infectious disease models

Anna M. Langmüller, Kiran A. Chandrasekher, Benjamin C. Haller, Samuel E. Champer, Courtney C. Murdock, Philipp W. Messer

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013849

Inverse modeling unveils governing law of mechano-chemical dynamics of epithelial migration

Yuto Kikuchi, Yoshifumi Asakura, Kazuhiro Aoki, Yohei Kondo, Honda Naoki

PLOS Computational Biology: published December 29, 2025 | https://doi.org/10.1371/journal.pcbi.1013854

Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution

Danfeng Chen, John D. Storey

PLOS Computational Biology: published December 31, 2025 | https://doi.org/10.1371/journal.pcbi.1013848

Correction: Data-driven modeling predicts gene regulatory network dynamics during the differentiation of multipotential hematopoietic progenitors

Joanna E. Handzlik, Manu

PLOS Computational Biology: published December 19, 2025 | https://doi.org/10.1371/journal.pcbi.1013823

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