Training biologists in Unix command-line skills: From curriculum to interactive online tutorials

Lucie Khamvongsa-Charbonnier, Robert Aboukhalil, Hélène Chiapello, Thomas Denecker, Pierre Poulain, Denis Puthier, Olivier Sand, Morgane Thomas-Chollier, Claire Toffano-Nioche

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014133

Ten simple rules for postdoctoral mums to stay competitive in academia

Belén Fadrique, Selene Báez

PLOS Computational Biology: published April 8, 2026 | https://doi.org/10.1371/journal.pcbi.1014145

Ten simple rules for organising an effective student-led writing retreat

Nicholas W. Daudt, Claudia Hird, Eleanor R. M. Kelly, Elli E. Leinikki, Gretchen J. McCarthy, Ian S. Dixon-Anderson, Jackson E. Beagley, Jessica B. Moffitt, Joseph S. Curtis, Lindsay M. Wickman, Meghan L. Duffy, Preston L. Maluafiti, Saskia E. Foreman, William Carome, Leah M. Crowe

PLOS Computational Biology: published April 13, 2026 | https://doi.org/10.1371/journal.pcbi.1014147

Ten common mistakes that could ruin your enrichment analysis

Anusuiya Bora, Matthew McKenzie, Mark Ziemann

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014122

Nine quick tips for software containerization

David Moreau, Kristina Wiebels

PLOS Computational Biology: published April 24, 2026 | https://doi.org/10.1371/journal.pcbi.1014197

Ten simple rules for mentoring and being mentored while neurodiverse

Adam B. Smith, Emily G. Adams, Ethan Abercrombie, Noor Bibi, Claire L. J. Bottini, Alissa J. Brown, Cybil N. Cavalieri, Alonwyn L. Clauser, Marlyse C. Duguid, Kasey D. Fowler-Finn, Jenna Hutchen, Victor Leite Jardim, Clarissa S. Rodriguez, Beck M. Swab, Steph Varghese

PLOS Computational Biology: published April 24, 2026 | https://doi.org/10.1371/journal.pcbi.1013917

Explaining attractive and repulsive biases in the subjective visual vertical

Stefan Glasauer, W. Pieter Medendorp

PLOS Computational Biology: published April 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014159

Multidimensional scaling informed by F-statistic: Visualizing grouped microbiome data with inference

Hyungseok Kim, Soobin Kim, Jeffrey A. Kimbrel, Megan M. Morris, Xavier Mayali, Cullen R. Buie

PLOS Computational Biology: published April 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014102

Predictive modeling of gene expression and localization of DNA binding site using deep convolutional neural networks

Arman Karshenas, Tom Röschinger, Hernan G. Garcia

PLOS Computational Biology: published April 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014092

Opposing cortical forces: Alpha slowing and sensorimotor mu acceleration during motor-related BCI training

Kyriaki Kostoglou, Gernot R. Müller-Putz

PLOS Computational Biology: published April 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014112

Identifying the optimal rapid antigen test for screening and determining the end of isolation: A modeling study

Yong Dam Jeong, William S. Hart, Masahiro Ishikane, Kwang Su Kim, Jong Hyuk Byun, Il Hyo Jung, Montie T. Harrison, Kazuyuki Aihara, Norio Ohmagari, Christopher B. Brooke, Ruian Ke, Robin N. Thompson, Shingo Iwami

PLOS Computational Biology: published April 2, 2026 | https://doi.org/10.1371/journal.pcbi.1013102

Emergence of multifrequency activity in a laminar neural mass model

Raul de Palma Aristides, Pau Clusella, Roser Sanchez-Todo, Giulio Ruffini, Jordi Garcia-Ojalvo

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014022

In silico assessment of arrhythmic risk following the implantation of engineered heart tissues in porcine hearts with varying infarct locations

Ricardo M. Rosales, Gonzalo R. Ríos-Muñoz, Ana María Sánchez de la Nava, María Eugenia Fernández-Santos, Javier Bermejo, Manuel Doblaré, Ana Mincholé, Esther Pueyo

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1013740

Directional and disruptive selection in populations structured by class and continuous ontogeny under incomplete plasticity

Arthur Weyna, Charles Mullon, Laurent Lehmann

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1013591

Using cell-specific late-phase asthma mRNA biomarkers to repurpose drugs that concurrently reverse disease signatures across multiple immune cell-types

Mingming Zhang, Young Woong Kim, Chen Xi Yang, Gail M. Gauvreau, John Marcus FitzGerald, Louis-Philippe Boulet, Paul M. O’Byrne, Scott J. Tebbutt, Amrit Singh

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014081

A Bayesian modelling framework for estimating tick-borne pathogen transmission dynamics at the host-tick interface

Younjung Kim, Bruno Faivre, Thierry Boulinier, Célia Sineau, Clémence Galon, Sara Moutailler, Laure Bournez, Raphaëlle Métras

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014146

Exploring neural manifolds across a wide range of intrinsic dimensions

Jacopo Fadanni, Rosalba Pacelli, Alberto Zucchetta, Pietro Rotondo, Michele Allegra

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014162

Clustering single-cell multi-omics data via weighted distance penalty and adaptive consistent graph regularization

Wei Zhang, Yue Yu, Xiaoying Zheng, Juan Shen, Yuanyuan Li

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014110

Subunit-specific behavioral modulation of sensory tuning in the visual cortex

Julia M. Mayer, Wiktor F. Młynarski

PLOS Computational Biology: published April 6, 2026 | https://doi.org/10.1371/journal.pcbi.1014123

Modeling spatial contrast sensitivity in responses of primate retinal ganglion cells to natural movies

Shashwat Sridhar, Michaela Vystrčilová, Mohammad H. Khani, Dimokratis Karamanlis, Helene M. Schreyer, Varsha Ramakrishna, Steffen Krüppel, Sören J. Zapp, Matthias Mietsch, Alexander S. Ecker, Tim Gollisch

PLOS Computational Biology: published April 7, 2026 | https://doi.org/10.1371/journal.pcbi.1014157

Quantifying SARS-CoV-2 Omicron variant spread and the impact of non-pharmaceutical interventions in Newfoundland and Labrador, Canada

Francis Anokye, Michael W. Z. Li, Steve Walker, Amy Hurford

PLOS Computational Biology: published April 8, 2026 | https://doi.org/10.1371/journal.pcbi.1013562

A framework for constructing insect steering circuits

Robert Mitchell, Barbara Webb

PLOS Computational Biology: published April 8, 2026 | https://doi.org/10.1371/journal.pcbi.1014009

A biophysical model of phagocytic cup dynamics: The effect of membrane tension

Peyman Shadmani, Behzad Mehrafrooz, Abbas Montazeri, David M. Richards

PLOS Computational Biology: published April 8, 2026 | https://doi.org/10.1371/journal.pcbi.1014148

PhageCGRNet: Integrating Chaos Game Representation of Genomes with Convolutional Neural Network for accurate phage host classification prediction

Ting Wang, Zu-Guo Yu, Jinyan Li, Xuan Lin

PLOS Computational Biology: published April 9, 2026 | https://doi.org/10.1371/journal.pcbi.1014130

Dynamic cholinergic signaling differentially desynchronizes cortical microcircuits dependent on modulation rate and network connectivity

Sibi Pandian, Scott Rich

PLOS Computational Biology: published April 10, 2026 | https://doi.org/10.1371/journal.pcbi.1013252

Rural-to-urban migrant worker mobility shaped measles epidemics in China

Peihua Wang, Xianwen Wang, Wenyi Zhang, Yong Wang, Sen Pei, Xiao-Ke Xu, Wan Yang

PLOS Computational Biology: published April 10, 2026 | https://doi.org/10.1371/journal.pcbi.1014182

Efficiency, accuracy and robustness of probability generating function based parameter inference method for stochastic biochemical reactions

Shiyue Li, Yiling Wang, Zhanpeng Shu, Ramon Grima, Qingchao Jiang, Zhixing Cao

PLOS Computational Biology: published April 10, 2026 | https://doi.org/10.1371/journal.pcbi.1014160

Nonlinear effects of noise on outbreaks of mosquito-borne diseases

Kyle J. -M. Dahlin, Karin Ebey, John E. Vinson, John M. Drake

PLOS Computational Biology: published April 13, 2026 | https://doi.org/10.1371/journal.pcbi.1013466

Activity-dependent neuromodulation and calcium homeostasis cooperate to produce robust and modulable neuronal function

Arthur Fyon, Guillaume Drion

PLOS Computational Biology: published April 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014177

Forecastability of infectious disease time series: are some seasons and pathogens intrinsically more difficult to forecast?

Lauren A. White, Tomás M. León

PLOS Computational Biology: published April 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014175

How muscle ageing affects rapid goal-directed movement: mechanistic insights from a simple model

Delyle T. Polet, Christopher T. Richards

PLOS Computational Biology: published April 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014023

On the role of L-type Ca²⁺ and BK channels in a biophysical model of cartwheel interneurons

Matteo Martin, Jonathan E. Rubin, Morten Gram Pedersen

PLOS Computational Biology: published April 15, 2026 | https://doi.org/10.1371/journal.pcbi.1013382

How the visual brain can learn to parse images using a multiscale, incremental grouping process

Sami Mollard, Sander M. Bohte, Pieter R. Roelfsema

PLOS Computational Biology: published April 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014193

Perceptual prediction error supports implicit process in motor learning

Xiaoyue Zhang, Wencheng Wu, Kunlin Wei

PLOS Computational Biology: published April 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014196

Unveiling gene perturbation effects through gene regulatory networks inference from single-cell transcriptomic data

Clelia Corridori, Merrit Romeike, Giorgio Nicoletti, Christa Buecker, Samir Suweis, Sandro Azaele, Graziano Martello

PLOS Computational Biology: published April 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014067

Developmental and aging changes in brain network switching dynamics revealed by EEG phase synchronization

Dionysios Perdikis, Rita Sleimen-Malkoun, Viktor Müller, Viktor Jirsa

PLOS Computational Biology: published April 16, 2026 | https://doi.org/10.1371/journal.pcbi.1013290

Systematic prioritization of potential therapeutic targets for glomerulonephritis using multi-omics Mendelian randomization

Guoqiang Li, Fu Jianhan, Jiashu Gu, Yinhuai Wang, Jiachen Liu, Dong Yang, Dianjie Zeng, Pengcheng Zhao

PLOS Computational Biology: published April 16, 2026 | https://doi.org/10.1371/journal.pcbi.1014174

Coherent cross-modal generation of synthetic biomedical data to advance multimodal precision medicine

Raffaele Marchesi, Nicolò Lazzaro, Walter Endrizzi, Gianluca Leonardi, Matteo Pozzi, Flavio Ragni, Stefano Bovo, Monica Moroni, Venet Osmani, Giuseppe Jurman

PLOS Computational Biology: published April 16, 2026 | https://doi.org/10.1371/journal.pcbi.1013455

A phase-field model for vesicle membranes incorporating area-difference elasticity

Yihong Liang, Emine Celiker, Ping Lin

PLOS Computational Biology: published April 17, 2026 | https://doi.org/10.1371/journal.pcbi.1014185

Double-CRISPR Knockout Simulation (DKOsim): A Monte-Carlo randomization system to model cell growth behavior and infer the optimal library design for growth-based double knockout screens

Yue Gu, Traver Hart, Luis Leon-Novelo, John Paul Shen

PLOS Computational Biology: published April 17, 2026 | https://doi.org/10.1371/journal.pcbi.1013510

‘Backpropagation and the brain’ realized in cortical error neuron microcircuits

Kevin Max, Ismael Jaras, Arno Granier, Katharina A. Wilmes, Mihai A. Petrovici

PLOS Computational Biology: published April 17, 2026 | https://doi.org/10.1371/journal.pcbi.1014164

La benchmarking large language models for extracting biobank-derived insights into health and disease

Manuel Corpas, Alfredo Iacoangeli

PLOS Computational Biology: published April 20, 2026 | https://doi.org/10.1371/journal.pcbi.1014224

Effects of sensorimotor delays and muscle force capacity limits on the performance of feedforward and feedback control in animals of different sizes

Sayed Naseel Mohamed Thangal, Heather L. More, C. David Remy, J. Maxwell Donelan

PLOS Computational Biology: published April 21, 2026 | https://doi.org/10.1371/journal.pcbi.1012502

Spatio–temporal modelling of in vitro influenza A virus infection: The impact of defective interfering particles on the type I interferon response

Yimei Li, Bjarke Frost Nielsen, Simon A. Levin, Aartjan J.W. te Velthuis, Bryan T. Grenfell

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014198

DMAPLM: A multimodal pretrained framework for computational drug repositioning

Hailin Chen, Zhongling Li

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014192

Ensemble forecasts of COVID-19 activity to support Australia’s pandemic response: 2020–22

Robert Moss, Ruarai J. Tobin, Mitchell O’Hara-Wild, Adeshina I. Adekunle, Dennis Liu, Tobin South, Dylan J. Morris, Gerard E. Ryan, Tianxiao Hao, Aarathy Babu, Katharine L. Senior, James G. Wood, Nick Golding, Joshua V. Ross, Peter Dawson, Rob J. Hyndman, David J. Price, James M. McCaw, Freya M. Shearer

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014199

Sharing the spotlight: Uncovering common attentional dynamics across species

Mina Glukhova, Alejandro Tlaie, Robert Taylor, Pierre-Antoine Ferracci, Katharine Shapcott, Berkutay Mert, Olga Arne, Andrei Ciuparu, Raul C. Muresan, Martha N. Havenith, Marieke L. Schölvinck

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014191

Enhancing generalizability of model discovery across parameter space with multi-experiment equation learning for biological systems

Maria-Veronica Ciocanel, John T. Nardini, Kevin B. Flores, Erica M. Rutter, Suzanne S. Sindi, Alexandria Volkening

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014161

Monotherapy cancer drug-blind response prediction is limited to intraclass generalization

William G. Herbert, Nicholas Chia, Paul A. Jensen, Marina R. S. Walther-Antonio

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1013232

Using experimental results of protein design to guide biomolecular energy-function development

Hugh K. Haddox, Gabriel J. Rocklin, Francis C. Motta, Devin Strickland, Samer F. Halabiya, Cameron Cordray, Hahnbeom Park, Eric Klavins, David Baker, Frank DiMaio

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014215

Phase-field modeling of border cell cluster migration in Drosophila

Naghmeh Akhavan, Alexander George, Michelle Starz-Gaiano, Bradford E. Peercy

PLOS Computational Biology: published April 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014176

Selective observation following betrayal shapes the social inference landscape

Sangkyu Son, Seng Bum Michael Yoo

PLOS Computational Biology: published April 24, 2026 | https://doi.org/10.1371/journal.pcbi.1014200

Structural mechanisms underlying distinct binding and activities of 18:0 and 18:1 lysophosphatidic acids at LPA1 receptor

Ayobami Diyaolu, Peter Obi, Pravita Balijepalli, Kathryn E. Meier, Senthil Natesan

PLOS Computational Biology: published April 24, 2026 | https://doi.org/10.1371/journal.pcbi.1013825

STARCall integrates image stitching, alignment, and read calling to enable scalable analysis of in situ sequencing data

Nicholas J. Bradley, Sriram Pendyala, Katie Partington, Douglas M. Fowler

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1013689

How competition can drive allochronic divergence: A case study in the Marine Midge, Clunio marinus

Alexander G. G. Jacobsen, Tobias S. Kaiser, Chaitanya S. Gokhale

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1014235

One model to rule them all: Unification of voltage-gated potassium channel models via deep non-linear mixed effects modelling

Domas Linkevicius, Angus Chadwick, Melanie I. Stefan, David C. Sterratt

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1013078

Diversity in emergent cell locomotion from the coupling cytosolic and cortical Marangoni flows with reaction–diffusion dynamics

Blaž Ivšić, Dorijan Vulić, Igor Weber, Piotr Nowakowski, Ana-Sunčana Smith

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1014216

Leveraging mathematical models to predict and control T-cell activation

Xabier Rey Barreiro, Jose Faro, Alejandro F. Villaverde

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1013769

Systems biology analysis of vasodynamics in mouse cerebral arterioles during resting state and functional hyperemia

Hadi Esfandi, Mahshad Javidan, Eric R. McGregor, Rozalyn M. Anderson, Ramin Pashaie

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1013113

A multi-omics framework for survival mediation analysis of high-dimensional proteogenomic data

Seungjun Ahn, Weijia Fu, Maaike van Gerwen, Lei Liu, Zhigang Li

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1014217

Study of Protein-Protein Interactions in Septin Assembly: Multiple amphipathic helix domains cooperate in binding to the lipid membrane

S. Mahsa Mofidi, Abhilash Sahoo, Christopher J. Edelmaier, Stephen J. Klawa, Ronit Freeman, Amy Gladfelter, M. Gregory Forest, Ehssan Nazockdast, Sonya M. Hanson

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1014230

Clustering of SARS-CoV-2 membrane proteins in lipid bilayer membranes

Joseph McTiernan, Yuanzhong Zhang, Siyu Li, Thomas E. Kuhlman, Umar Mohideen, Michael E. Colvin, Roya Zandi, Ajay Gopinathan

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1014229

Refining biomarker-based clustering of cardiovascular inflammatory phenotypes in HIV using Recursive Feature Addition: A comparative evaluation approach

Rachel Mac Cann, Dana Alalwan, Gurvin Saini, Alejandro Abner Garcia Leon, Neeltje A. Kootstra, Padraig McGettrick, Aoife G Cotter, Alan Winston, Peter Reiss, Caroline Sabin, Patrick W. Mallon, on behalf of the UPBEAT-CAD, AIID and COBRA cohorts

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1014209

Bifurcation of neural firing patterns driven by potassium dynamics and neuron–electrode geometry during high-frequency stimulation

Yue Yuan, Junyang Zhang, Chen Wang, Hao Yan, Ning Zhang, Kun Zhang, Zheshan Guo, Zhaoxiang Wang

PLOS Computational Biology: published April 28, 2026 | https://doi.org/10.1371/journal.pcbi.1014228

CASER: A semi-supervised model with multi-omics data integration prioritizes cancer-associated epigenetic regulator genes

Hao Li, Chaohuan Lin, Liyu Liu, Jie Lyu, Zhen Feng

PLOS Computational Biology: published April 28, 2026 | https://doi.org/10.1371/journal.pcbi.1014253

MsgaBpred: A B-cell epitope predictor integrating AlphaFold3-predicted structures with multi-scale GCNs and pre-trained language model ESM-C

Shanyue Wang, Aoyun Geng, Zhenjie Luo, Yazi Li, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Zilong Zhang, Tao Wang, Feifei Cui

PLOS Computational Biology: published April 28, 2026 | https://doi.org/10.1371/journal.pcbi.1014195

Stochastic intracellular calcium dynamics show preserved structures identified by deep learning classification

Jaesung Choi, Athokpam Langlen Chanu, Shakul Awasthi

PLOS Computational Biology: published April 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014240

Polyandry: A threat or an opportunity for the sterile insect technique?

Marine A. Courtois, Louise van Oudenhove, Suzanne Touzeau, Frédéric Grognard, Ludovic Mailleret

PLOS Computational Biology: published April 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014212

Individual and population level uncertainty interact to determine the performance of outbreak surveillance systems

Callum R. K. Arnold, Alex C. Kong, Amy K. Winter, William J. Moss, Bryan N. Patenaude, Matthew J. Ferrari

PLOS Computational Biology: published April 29, 2026 | https://doi.org/10.1371/journal.pcbi.1013309

Computational insights on the molecular interplay between KRas (G12D mutation) and SOS1 modulated by the inhibitor BI-3406

Juan Zeng, YiXuan Lan, Fei Xia

PLOS Computational Biology: published April 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014213

Evolutionary Kuramoto dynamics unravels origins of chimera states in neural populations

Thomas Zdyrski, Scott Pauls, Feng Fu

PLOS Computational Biology: published April 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014214

Population dynamics of generalist and specialist strategies under feast-famine cycles

Rintaro Niimi, Chikara Furusawa, Yusuke Himeoka

PLOS Computational Biology: published April 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014265

Complexity of resting cortical activity predicts neurophysiological responses to theta-burst stimulation but fails to generalize: A rigorous machine-learning approach

Matthew Herbert Ning, Haoqi Sun, Brice Passera, Duygu Bagci Das, Brandon Westover, Alvaro Pascual-Leone, Emiliano Santarnecchi, Mouhsin M. Shafi, Recep A. Ozdemir

PLOS Computational Biology: published April 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014154

Evaluating the utility of amino acid similarity-aware kmers to represent TCR repertoires for classification

Hannah Kockelbergh, Shelley C. Evans, Liam Brierley, Peter L. Green, Andrea L. Jorgensen, Elizabeth J. Soilleux, Anna Fowler

PLOS Computational Biology: published April 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014211

Learning the bistable cortical dynamics of the sleep-onset period

Zhenxing Hu, Manaoj Aravind, Xu Lei, J. Nathan Kutz, Jean-Julien Aucouturier

PLOS Computational Biology: published April 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014246

Correction: A computational framework to study EGFR signaling distribution in egg chambers during dynamic interactions between soma and germline

Nastassia Pouradier Duteil, Nicole T. Revaitis, Mathew G. Niepielko, Eric A. Klein, Nir Yakoby, Benedetto Piccoli

PLOS Computational Biology: published April 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014155

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Correction: The Burr distribution as a model for the delay between key events in an individual’s infection history

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PLOS Computational Biology: published April 6, 2026 | https://doi.org/10.1371/journal.pcbi.1014163

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A surface morphology-based inference method for the cell wall elasticity profile in tip-growing cells

Rholee Xu, Luis Vidali, Min Wu

PLOS Computational Biology: published April 2, 2026 | https://doi.org/10.1371/journal.pcbi.1013532

A standardized workflow for kinetic metabolic model curation and dissemination

Margaret Cook, Stella Anastasakis, Adel Heydarabadipour, Janis Shin, Diego Alba Burbano, James M. Carothers, Herbert M. Sauro

PLOS Computational Biology: published April 20, 2026 | https://doi.org/10.1371/journal.pcbi.1014227

Automating population construction and parallel simulation of biophysical models for neuromuscular cells: An inverse approach

Hojeong Kim

PLOS Computational Biology: published April 24, 2026 | https://doi.org/10.1371/journal.pcbi.1014184

PICDGI: A framework for predicting cancer driver genes through dynamic gene-gene interaction modeling of single-cell data

Komlan Atitey, Benedict Anchang

PLOS Computational Biology: published April 27, 2026 | https://doi.org/10.1371/journal.pcbi.1014143

QoALa: A comprehensive workflow for viral quasispecies diversity comparison using long-read sequencing data

Nakarin Pamornchainavakul, Declan C. Schroeder, Kimberly VanderWaal

PLOS Computational Biology: published April 28, 2026 | https://doi.org/10.1371/journal.pcbi.1014208

Semi-parametric empirical bayes method for multiplet detection in snATAC-seq with probabilistic multi-omic integration

Yuntian Wu, Haoran Hu, Wei Chen, Johann E. Gudjonsson, Lam C. Tsoi, Xiaoquan Wen

PLOS Computational Biology: published April 29, 2026 | https://doi.org/10.1371/journal.pcbi.1013653

Cell type annotation for scATAC-seq via DNA large language model and graph domain adaptation

Yan Liu, Sheng Guan, He Yan, Long-Chen Shen, Ji-Peng Qiang, Guo Wei

PLOS Computational Biology: published April 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014226

ntStat: k-mer characterization using occurrence statistics in raw sequencing data

Parham Kazemi, Lauren Coombe, René L. Warren, Inanc Birol

PLOS Computational Biology: published April 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014158