Ten simple rules for teaching data science

Tiffany A. Timbers, Mine Çetinkaya-Rundel

PLOS Computational Biology: published June 10, 2026 | https://doi.org/10.1371/journal.pcbi.1014338

Ten simple rules for executing an inherited research plan in computational biology

Sahar Javaheri Tehrani, Toni Ingolf Gossmann

PLOS Computational Biology: published June 12, 2026 | https://doi.org/10.1371/journal.pcbi.1014357

Ten simple rules for writing a peer review

Farzana Rahman, Dan DeBlasio

PLOS Computational Biology: published June 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014359

Ten simple rules for turning your qualifying exam into an NIH-style fellowship proposal: A guide for graduate students

Courtney Peña-Lima, Cameron S. Bader, Brendan K. Ball, Troy C. Dildine, Mekhala V. Dissanayake, Iris van ‘t Erve, Albina Ibrayeva, Amy Nippert, M.K. Quinn, Chelse Spinner, Samuel Thompson, Antonio Tomasso, Crystal M. Botham

PLOS Computational Biology: published June 18, 2026 | https://doi.org/10.1371/journal.pcbi.1014420

Ten simple rules for making the supplement increase your paper’s impact

Volker Grimm, Uta Berger, Stefano Mammola

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014419

Ten quick tips for classifying unknown bacteriophage

Fabian T. S. Bastiaanssen, Colin Hill, Andrey N. Shkoporov

PLOS Computational Biology: published June 23, 2026 | https://doi.org/10.1371/journal.pcbi.1014403

The total eclipse of bioinformatics: From disruption to convention, and a gentle warning

Christos A. Ouzounis

PLOS Computational Biology: published June 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014287

Predictive modeling in biology and medicine: Digital twins and multi-scale modeling

Mark Alber, Amber Smith, Reinhard Laubenbacher, Roeland M. H. Merks

PLOS Computational Biology: published June 4, 2026 | https://doi.org/10.1371/journal.pcbi.1014349

On the conditions for shifts in metabolic strategies

Maarten J. Droste, Robert Planqué, Frank J. Bruggeman

PLOS Computational Biology: published June 26, 2026 | https://doi.org/10.1371/journal.pcbi.1014417

A statistical framework for comparing epidemic forests

Cyril Geismar, Peter J. White, Anne Cori, Thibaut Jombart

PLOS Computational Biology: published June 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014271

Supervised deep learning with gene functional annotation for cell classification

Zhexiao Lin, Yuanyuan Gao, Wei Sun

PLOS Computational Biology: published June 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014327

On real-time calibrated prediction for complex model-based decision support in pandemics: Part 2

Trevelyan J. McKinley, Daniel B. Williamson, Xiaoyu Xiong, James M. Salter, Robert Challen, Leon Danon, Ben Youngman, Doug McNeall

PLOS Computational Biology: published June 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014299

Challenges and progress in RNA velocity: Comparative analysis across multiple biological contexts

Sarah Ancheta, Leah Dorman, Guillaume Le Treut, Abel Gurung, Greg Huber, Loïc A. Royer, Alejandro Granados, Merlin Lange

PLOS Computational Biology: published June 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014303

Data-driven model reveals increased stability of CAG-expanded huntingtin RNA due to MID1 binding

Yuhong Liu, Annika Reisbitzer, Domagoj Dorešić, Jan Hasenauer, Sybille Krauß, Tatjana Tchumatchenko

PLOS Computational Biology: published June 2, 2026 | https://doi.org/10.1371/journal.pcbi.1014342

Assessing the importance of sex and disease-specific anatomy in electrophysiology and mechanical simulations with a newly developed public virtual cohort of four-chamber heart models

José Alonso Solís-Lemus, Rosie K. Barrows, Cristobal Rodero, Marina Strocchi, Natalie Montarello, Nishant Lahoti, Cesare Corrado, Abdul Qayyum, Shahrokh Rahmani, Caroline Roney, Gernot Plank, Christoph Augustin, Hao Xu, Alistair Young, Pras Pathmanathan, Ronak Rajani, Steven A. Niederer

PLOS Computational Biology: published June 2, 2026 | https://doi.org/10.1371/journal.pcbi.1014325

Linking reduced prefrontal microcircuit inhibition in schizophrenia to EEG biomarkers in silico

Sana Rosanally, Frank Mazza, Heng Kang Yao, Faraz Moghbel, Hannah Seo, Etay Hay

PLOS Computational Biology: published June 2, 2026 | https://doi.org/10.1371/journal.pcbi.1014304

PepAnno: A structure-aware deep learning framework for bioactive peptide prediction, structural visualization, and physicochemical profiling

Enyan Liu, Yueming Hu, Liya Liu, Yifan Chen, Shilong Zhang, Sida Li, Haoyu Chao, Luyao Xie, Yi Shen, Liangwei Wu, Julio Raúl Fernández Massó, Ming Chen

PLOS Computational Biology: published June 2, 2026 | https://doi.org/10.1371/journal.pcbi.1014369

A comparative study of simulation-based inference methods for epidemic models with identifiability considerations

Geunsoo Jang, K. Selçuk Candan, Gerardo Chowell

PLOS Computational Biology: published June 2, 2026 | https://doi.org/10.1371/journal.pcbi.1014364

IsoPepTracker: An interactive web application for peptide-driven isoform analysis

Araf Mahmud, Chen Huang

PLOS Computational Biology: published June 3, 2026 | https://doi.org/10.1371/journal.pcbi.1014324

CIPHER: An end-to-end framework for designing optimized aggregated spatial transcriptomics experiments

Zachary Hemminger, Haley De Ocampo, Fangming Xie, Zhiqian Zhai, Jingyi Jessica Li, Roy Wollman

PLOS Computational Biology: published June 4, 2026 | https://doi.org/10.1371/journal.pcbi.1014362

Cell differentiation can underpin the reproducibility of morphogenesis

Dominic K. Devlin, Austen R. D. Ganley, Nobuto Takeuchi

PLOS Computational Biology: published June 4, 2026 | https://doi.org/10.1371/journal.pcbi.1014361

StPedf: Cell trajectory inference of spatial transcriptomics via spatial proximity embedding and spatial density-adaptive fusion

Yuan Zhang, Ziyan Sun, Zhixin Shi, Mengdi Nan, Yuhan Fu, Qing Ren, Jie Gao

PLOS Computational Biology: published June 5, 2026 | https://doi.org/10.1371/journal.pcbi.1014346

Heuristic multi-site optimization for protein sequence design using Masked Protein Language Models

Lijuan Wang, Yuze Wang, Chen Qiu, Liwei Xiao, Xianliang Liu, Junjie Chen

PLOS Computational Biology: published June 5, 2026 | https://doi.org/10.1371/journal.pcbi.1014365

A multiscale, Bayesian inference approach to augment mechanistic models of cell signaling with machine-learning predictions of binding affinity

Holly A. Huber, Stacey D. Finley

PLOS Computational Biology: published June 5, 2026 | https://doi.org/10.1371/journal.pcbi.1014321

Statistics of cortical representational drift can enable robust readout

Charles Micou, Timothy O’Leary

PLOS Computational Biology: published June 8, 2026 | https://doi.org/10.1371/journal.pcbi.1014297

Assessing the inference of single-cell phylogenies and population dynamics from CRISPR lineage recordings

Julia Pilarski, Tanja Stadler, Sophie Seidel

PLOS Computational Biology: published June 8, 2026 | https://doi.org/10.1371/journal.pcbi.1014370

Evolution of phenocopying in a dynamical model of developmental trajectories

Yuuki Matsushita, Archishman Raju

PLOS Computational Biology: published June 9, 2026 | https://doi.org/10.1371/journal.pcbi.1014385

Multi-stable oscillations in cortical networks with two classes of inhibition

Arnab Dey Sarkar, Bard Ermentrout

PLOS Computational Biology: published June 9, 2026 | https://doi.org/10.1371/journal.pcbi.1014391

Interpreting higher-order dependence in multimorbidity using cohort data: A partial information decomposition approach

Cillian Hourican, Geeske Peeters, René J. F. Melis, Almar Kok, Natasja M. van Schoor, Sandra Wezeman, Mike Lees, Marcel G. M. Olde Rikkert, Rick Quax

PLOS Computational Biology: published June 10, 2026 | https://doi.org/10.1371/journal.pcbi.1014386

A mean-field model of neural networks with PV and SOM interneurons reveals connectivity-based mechanisms of gamma oscillations

Farzin Tahvili, Martin Vinck, Matteo Di Volo

PLOS Computational Biology: published June 10, 2026 | https://doi.org/10.1371/journal.pcbi.1014378

Robust discovery of mutational signatures using power posteriors

Catherine Xue, Jeffrey W. Miller, Scott L. Carter, Jonathan H. Huggins

PLOS Computational Biology: published June 11, 2026 | https://doi.org/10.1371/journal.pcbi.1014372

MicroRNA target gene prediction model based on input-feature dependency and sample data expansion technique

Yan Shao, Yazhou Li, Hexin Zhai, Shimin Dong

PLOS Computational Biology: published June 11, 2026 | https://doi.org/10.1371/journal.pcbi.1014402

Catecholamine precursor modulation of human exploration: Evidence from a large gender-balanced sample

Angela Mariele Brands, Kilian Knauth, David Mathar, Tim Roedder, Kerstin Lisner, Jan Peters

PLOS Computational Biology: published June 11, 2026 | https://doi.org/10.1371/journal.pcbi.1014356

A zero-parameter first-principles gate framework for full-length TP53 missense variant interpretation

Masamichi Iizumi

PLOS Computational Biology: published June 11, 2026 | https://doi.org/10.1371/journal.pcbi.1014168

A new method for augmenting short time series, with application to pain events in sickle cell disease

Kumar Utkarsh, Nirmish R. Shah, Tanvi Banerjee, Daniel M. Abrams

PLOS Computational Biology: published June 12, 2026 | https://doi.org/10.1371/journal.pcbi.1014389

Stage-dependent role of NEK7 in the inactive-to-active conformational transition of NLRP3 monomer

Jin Peng, Wenjian Li, Hao Wang, Xiaohui Chen, Manjie Zhang, Bin Sun

PLOS Computational Biology: published June 12, 2026 | https://doi.org/10.1371/journal.pcbi.1014405

WormSORT: A detection-based multiple object tracking model for individual silkworms in breeding environments

Hongkang Shi, Linbo Li, Shiping Zhu, Haibo He, Minghui Zhu, Jianfei Zhang

PLOS Computational Biology: published June 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014410

Environmental “knees” and “wiggles” as strong stabilizers of species’ range limits set by interspecific competition

Farshad Shirani, Benjamin G. Freeman

PLOS Computational Biology: published June 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014336

Fung-AI: An AI/ML-driven pipeline for antifungal peptide discovery

Daniel S. Berman, Libby M. Lewis, Tom D. Curtis, Olivia N. Tiburzi, Daniel F. Q. Smith, Arturo Casadevall, Laura J. Dunphy

PLOS Computational Biology: published June 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014105

A multilevel hierarchical framework for quantification of experimental heterogeneity in population snapshot data

David J. Warne, Xiangrun Zhu, Thomas P. Steele, Stuart T. Johnston, Scott A. Sisson, Matthew Faria, Ryan J. Murphy, Alexander P. Browning

PLOS Computational Biology: published June 15, 2026 | https://doi.org/10.1371/journal.pcbi.1014379

Evolution and the ultimatum game: An agent-based model with interbirth intervals and population structure

Jeffrey C. Schank, Matt L. Miller

PLOS Computational Biology: published June 16, 2026 | https://doi.org/10.1371/journal.pcbi.1014387

Machine learning-driven identification of virulence determinants in Borrelia burgdorferi associated with human dissemination

Hoa Thanh Nguyen, Catherine A. Brissette

PLOS Computational Biology: published June 17, 2026 | https://doi.org/10.1371/journal.pcbi.1014407

Combining machine learning and iterative experiments to keep pace with emerging viral variants of concern

Thomas Sheffield, Ryan C. Bruneau, Stephen Won, Kenneth L. Sale, Brooke Harmon, Le Thanh Mai Pham

PLOS Computational Biology: published June 17, 2026 | https://doi.org/10.1371/journal.pcbi.1014394

Deciphering cell type-specific causal genetic effects on brain imaging-derived phenotypes and disorders with single-cell Mendelian randomization

Anyi Yang, Xingzhong Zhao, Xing-Ming Zhao, Yucheng T. Yang

PLOS Computational Biology: published June 17, 2026 | https://doi.org/10.1371/journal.pcbi.1014422

Mechanisms underlying spontaneous and evoked calcium responses in oligodendrocyte precursor cells: A modeling investigation

Martin Lardy, Leqi Wang, Claire Guerrier, Veronica T. Cheli, Pablo M. Paez, Anmar Khadra

PLOS Computational Biology: published June 18, 2026 | https://doi.org/10.1371/journal.pcbi.1013430

A comparison of contact patterns derived from the population structure in agent-based models and empirical contact survey data

Janik Suer, Johannes Ponge, Michael Brüggemann, Jan Pablo Burgard, Vitaly Belik, Bernd Hellingrath, Alejandra Rincón Hidalgo, Andrzej K. Jarynowski, Richard Pastor, Huynh Thi Phuong, Steven Schulz, Ashish Thampi, Chao Xu, Marlli Zambrano, Rafael Mikolajczyk, André Karch, Veronika K. Jaeger, on behalf of the OptimAgent Consortium

PLOS Computational Biology: published June 18, 2026 | https://doi.org/10.1371/journal.pcbi.1013533

A lactylation- and autophagy-associated prognostic signature reveals LSEC-derived CLEC3B as a novel mediator of hepatocellular carcinoma suppression

Youai Song, Yinkuan Ning, Meihui Li, Jianwei Lan, Liangchen Lei, Yufei Han, Zhuo Meng, Binjie Li, Pengpeng Liu, Quanyan Liu

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014426

Beyond the canonical: The role of post-transcriptional regulation in drug-target interaction prediction

Md Istiaq Ansari, Khandakar Tanvir Ahmed, Debby D. Wang, Kirill Medvedev, Wei Zhang

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014440

Integrative modelling of innate immune response dynamics during virus infection

Ramya Boddepalli, Harsh Chhajer, Rahul Roy

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014395

Heterogeneous suppressive effect of Wolbachia incompatible insect technique coupled with sterile insect technique across time and historical Ae. aegypti abundance - using distributional synthetic controls

Yichen Zhai, Chia-Chen Chang, Zhiyong Xi, Cheong Huat Tan, Lee Ching Ng, Jue Tao Lim

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014355

Towards modeling phage therapy

Rob J. de Boer, Robert Schooley, Alan S. Perelson

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014408

Cell-type resolved transcriptional network analysis of in vivo cellular senescence following injury

Alda Sabalic, Victoria Moiseeva, Andres Cisneros, Oleg Deryagin, Eusebio Perdiguero, Pura Muñoz-Cánoves, Jordi Garcia-Ojalvo

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014429

Adhesion and polarity-driven morphogenesis: Mechanisms and constraints in tissue formation

Yoshiyuki T. Nakamura, Chikara Furusawa, Kunihiko Kaneko

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1013939

TCRBinder: Unified pre-trained language model with paired-chain synergy for predicting T-cell receptor binding specificity

Weihe Dong, Qiang Yang, Long Xu, Xiaokun Li, Kuanquan Wang, Suyu Dong, Gongning Luo, Xianyu Zhang, Tiansong Yang, Xin Gao, Guohua Wang

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014396

A novel biclustering algorithm for mining m⁶A co-methylation patterns based on beta-binomial distribution and data screening strategy

Zhaoyang Liu, Yuteng Xiao, Dao Xiang, Hao Shi, Kaijian Xia

PLOS Computational Biology: published June 23, 2026 | https://doi.org/10.1371/journal.pcbi.1014430

CARGO: A Cytometry Analysis framework via Regularized Graph Optimal-transport

Abida Sanjana Shemonti, Grzegorz B. Gmyrek, Katrien L. A. Quintelier, Sofie Van Gassen, Yvan Saeys, Marcella Willemsen, Joachim G. J. V. Aerts, Eva V. E. Madsen, J. Paul Robinson, Alex Pothen, Bartek Rajwa

PLOS Computational Biology: published June 23, 2026 | https://doi.org/10.1371/journal.pcbi.1014358

A new cancer progression model: From synthetic tumors to real data and back

Daniela Volpatto, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Francesca Cordero, Roberta Sirovich

PLOS Computational Biology: published June 24, 2026 | https://doi.org/10.1371/journal.pcbi.1013991

The transcriptional gradient in negative-strand RNA viruses suggests a common RNA transcription mechanism

Connor R. King, Casey-Tyler Berezin, Brian Munsky, Jean Peccoud

PLOS Computational Biology: published June 24, 2026 | https://doi.org/10.1371/journal.pcbi.1014441

Variable selection-combined causal mediation analysis for continuous treatments with application to large-dimensional biomedical data

Yajing Zhou, Kecheng Wei, Yahang Liu, Zhaoyang Li, Chen Huang, Guoyou Qin, Yongfu Yu

PLOS Computational Biology: published June 24, 2026 | https://doi.org/10.1371/journal.pcbi.1014436

Evaluating vectors for the design of a spillover-disrupting Lassa virus transmissible vaccine

Scott L. Nuismer, Christopher H. Remien, Bruno Ghersi, Jenna Nichols, James Bangura, Emmanuel Amara, Marilyn C. Kanu, Osman T. Kanu, Edwin G. Lavalie, Mohamed Turay, Patrick L. K. Swaray, Mohamed A. Vandi, Joseph Hughes, Heinz Feldmann, Kyle Rosenke, Michael A. Jarvis, Andrew J. Davison

PLOS Computational Biology: published June 26, 2026 | https://doi.org/10.1371/journal.pcbi.1014390

scRADAR: Dissecting intratumoral drug response heterogeneity at single-cell resolution via mechanism-guided prototype routing

Ren Qi, Wenjie Teng, Xin Yang, Peng Han, Alexey K. Shaytan, Bin Liu

PLOS Computational Biology: published June 26, 2026 | https://doi.org/10.1371/journal.pcbi.1014392

Quantitative anatomy and biophysical modeling of ascending neuromodulatory systems in the developing rat neocortex

Cristina Colangelo, Alberto Muñoz, Alberto Antonietti, Vishal Sood, Alejandro Antón-Fernández, Joni Herttuainen, Armando Romani, Javier DeFelipe, Srikanth Ramaswamy

PLOS Computational Biology: published June 26, 2026 | https://doi.org/10.1371/journal.pcbi.1014460

Predicting continuous outcomes: Some new tests of associative approaches to contingency learning

Julie Y. L. Chow, Hilary J. Don, Ben Colagiuri, Evan J. Livesey

PLOS Computational Biology: published June 26, 2026 | https://doi.org/10.1371/journal.pcbi.1013220

Single-threshold–guided adaptive cancer therapy with partial-cycle treatment: A mechanistic and reinforcement learning analysis

Kexin Ma, Ningjing Wang, Zai Yang, Robert A. Cheke, Biao Tang

PLOS Computational Biology: published June 26, 2026 | https://doi.org/10.1371/journal.pcbi.1014457

Delayed reward information is underweighted in reinforcement learning with dispersed feedback

Miruna Cotet, David Poensgen, Ian Krajbich

PLOS Computational Biology: published June 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014459

Systematic design of auxotrophic strains and media conditions to probe metabolic functions in E. coli

Roghaye Mohammadbeygi, Patrick F. Suthers, Fang-Yu Chung, Brian F. Pfleger, Costas D. Maranas

PLOS Computational Biology: published June 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014469

GHF-ACL: A novel contrastive learning framework with multi-order graph structures for herb-disease association prediction

Yunmeng Zhang, Xiuhong Wu, Qiutong Wang, Lin Shi, Meiling Liu, Guohua Wang

PLOS Computational Biology: published June 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014461

GATE: Adaptive learning with working memory by information gating in multi-lamellar hippocampal formation

Yuechen Liu, Zishun Wang, Chen Qiao, Zongben Xu

PLOS Computational Biology: published June 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014438

Neuronal excitability and parameter variability in the Hodgkin-Huxley model

Alon Korngreen

PLOS Computational Biology: published June 29, 2026 | https://doi.org/10.1371/journal.pcbi.1014458

Linking retinal sampling in neural encoding models to temporal profiles of visual processing in humans

Niklas Müller, Hongye Chen, Sofie Wahlberg, H. Steven Scholte, Iris I. A. Groen

PLOS Computational Biology: published June 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014371

Detection, communication, and individual identification with deep audio embeddings: A case study with North Atlantic right whales

Irina Tolkova, Holger Klinck, Dana A. Cusano, Anke Kügler, Susan E. Parks

PLOS Computational Biology: published June 30, 2026 | https://doi.org/10.1371/journal.pcbi.1013321

Correction: Viral escape-inspired framework for structure-guided dual bait protein biosensor design

Yee Chuen Teoh, Mohammed Sakib Noor, Sina Aghakhani, Jack Girton, Guiping Hu, Ratul Chowdhury

PLOS Computational Biology: published June 12, 2026 | https://doi.org/10.1371/journal.pcbi.1014398

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Histology-informed spatial domain identification through multi-view graph convolutional networks

Huihui Zhang, Jiaxing Chang, Zirong Li, Yue Sun, Pinli Hu, Haoxiu Wang, Hang Yang, Yonglin Ren, Xingtan Zhang, Zehua Chen, Kok Wai Wong, Haojing Shao

PLOS Computational Biology: published June 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014281

scMagnifier: Resolving fine-grained cell subtypes via GRN-informed perturbations and consensus clustering

Zhenhui He, Kangning Dong

PLOS Computational Biology: published June 18, 2026 | https://doi.org/10.1371/journal.pcbi.1014167

Exploring the structural lexicon of the Proteome via Metric Geometry

Elijah Gunther, Pablo G. Camara

PLOS Computational Biology: published June 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014487

CAdir: Joint clustering of cells and genes for single-cell transcriptomics with visualization-driven cluster quality assessment

Clemens Kohl, Martin Vingron

PLOS Computational Biology: published June 30, 2026 | https://doi.org/10.1371/journal.pcbi.1014418

BeetleAtlas 2: An enhanced Tribolium castaneum web resource for tissue and developmental transcriptomics allowing refinement of gene predictions

David P. Leader, Muhammad T. Naseem, Janina L. Rinke, Kenneth Veland Halberg

PLOS Computational Biology: published June 1, 2026 | https://doi.org/10.1371/journal.pcbi.1014314

pyhgf: A neural network library for predictive coding

Nicolas Legrand, Lilian Weber, Peter Thestrup Waade, Anna Hedvig Møller Daugaard, Mojtaba Khodadadi, Nace Mikuš, Christoph Mathys

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014340

GrassSV – hybrid method to detect structural variants in high throughput DNA-seq data

Dominik Witczak, Krzysztof Sychla, Julia Wysocka, Artur Laskowski, Wojciech Frohmberg, Marta Glowacka, Alicja Dzik, Piotr Lukasiak, Jacek Blazewicz, Aleksandra Swiercz

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014406

CoDaLoMic: An R package for modeling microbiome compositional and longitudinal data

Irene Creus-Martí, Andrés Moya, Francisco J. Santonja

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1014328

HoloBio: A holographic microscopy tool for quantitative biological analysis

Waira Mona, Maria J. Gil-Herrera, Emanuel Mazo, Daniel Córdoba, Sofia Obando-Vasquez, Maria J. Lopera, Rene Restrepo, Carlos Trujillo, Ana Doblas, Raul Castaneda

PLOS Computational Biology: published June 22, 2026 | https://doi.org/10.1371/journal.pcbi.1013928