Table Of Contents Page, PNAS Volume 122, Number 28
This Week in PNAS
Editorial
Inner Workings
QnAs
Commentaries
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Letters
Brief Report
Cumulative culture requires learning mechanisms that are both efficient and flexible
in the face of environmental change. We examine models of this learning mechanism
that emphasize teaching what to do (causally opaque procedures) and those that ...
Physical Sciences
Applied Mathematics
Glioma is the most common primary malignant brain tumor and preoperative genetic profiling
is essential for the management of glioma patients. Our study focused on tumor regions
segmentation and predicting the World Health Organization (WHO) grade, ...
When a fraction of a population becomes immune to an infectious disease, the population-wide
infection risk decreases nonlinearly due to collective protection, known as herd immunity.
Some studies based on mean-field models suggest that natural infection ...
Applied Physical Sciences
The ciliated epithelium of the human respiratory tract is covered by the airway surface
liquid, a protective fluid consisting of two layers: the periciliary layer (PCL),
where motile cilia reside and generate fluid flow, and an overlying mucus layer. The
...
The thermal conductivities of crystals and glasses vary strongly and with opposite
trends upon heating, decreasing in crystals and increasing in glasses. Here, we show
that the dominant conduction mechanisms of crystals (particle-like propagation) and
...
Sliding friction between two dry surfaces is commonly described by the speed-independent
Amonton–Coulomb friction force law. However, there are many situations where multiple
frictional contact points between two surfaces are “active” and each can move at ...
Biophysics and Computational Biology
In superresolution optical fluctuation imaging (SOFI), molecules spaced closer than
the diffraction limit can be separated through spatial and temporal correlation analysis
of the fluorescence intensity fluctuations. The resolution and speed of SOFI ...
Photosynthesis, the fundamental process sustaining life on Earth, depends on the photosystem
II (PSII) reaction center’s ability to initiate the charge transport process. In this
study, we have investigated this charge transport process with a focus on ...
Allosteric modulation of G protein–coupled receptors (GPCRs) is an exciting strategy
for developing new therapeutic agents, and it has several advantages over more commonly
used orthosteric drugs. Recently determined GPCR structures have revealed ...
Chemistry
Introducing neuromorphic computing paradigms into taste-sensing technology will bring
unprecedented opportunities for developing new hardware architectures with perceptual
intelligence. Constructing the biomimetic gustatory system, however, remains a ...
The electrocatalytic semihydrogenation of acetylene (C2H2), powered by renewable electricity, provides an energy- and cost-efficient alternative
to conventional thermocatalytic methods for purifying crude ethylene (C2H4) streams. This approach provides a ...
Water splitting for hydrogen production is essential in advancing the hydrogen economy.
Multiprincipal element alloys offer promising opportunities for optimizing this process,
yet their vast compositional space and the presence of local minima pose ...
In chemotaxis, motile bacteria recognize external molecules and move toward favorable
concentrations. Chemoreceptors form complexes that perform transmembrane signaling,
control a histidine kinase, and undergo posttranslational adaptational modifications.
...
Over 65 million individuals worldwide are estimated to have Long COVID (LC), a complex
multisystemic condition marked by fatigue, post-exertional malaise, and other symptoms
resembling myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS). With no ...
Computer Sciences
Transformers have a remarkable ability to learn and execute tasks based on examples
provided within the input itself, without explicit prior training. It has been argued
that this capability, known as in-context learning (ICL), is a cornerstone of ...
Earth, Atmospheric, and Planetary Sciences
Speleothem δ18O records from central southern China have long been regarded as a key benchmark for
Asian summer monsoon intensity. However, the similar δ18O minima observed among precession minima and their link to seasonal precipitation
mixing remains ...
Engineering
In order to proliferate, bacteria must remodel their cell wall at the division site.
The division process is driven by the enzymatic activity of peptidoglycan synthases
and hydrolases around the constricting Z-ring. We introduce a morphoelastic model
that ...
Mathematics
Let N and p be prime numbers with such that . In a previous paper, we showed that there is a cuspform f of weight 2 and level whose ℓ-th Fourier coefficient is congruent to modulo a prime above p for all primes ℓ. In this paper, we prove that this form ...
Physics
The friction force typically increases linearly with normal load with a constant of
proportionality called the coefficient of friction. Most materials exhibit a positive
friction coefficient, so that an increase in the normal load leads to an increase
in ...
Social Sciences
Demography
In contrast to earlier US policies of open war, forcible removal, and relocation to
address the “Indian Problem,” the Dawes Act of 1887 focused on assimilation and land
severalty—making American Indians citizens of the United States with individually
...
This study examines the theoretical and methodological limitations of migration research
in understanding gender-specific trends of migration. In particular, theory-driven
methods suffer from the gender blindness of migration theories, while data-driven
...
Psychological and Cognitive Sciences
Gratitude practice is a popular strategy for promoting happiness worldwide. However,
is it equally effective for people from different cultural backgrounds? To answer
this question, we conducted a preregistered meta-analysis on the effectiveness of
...
This research investigates the neurophysiological mechanisms of experiential versus
monetary choices under risk. While ventral striatum and insula activity are instrumental
in predicting monetary choices, we find that hippocampal activity plays a key role
...
Stimulus-driven, multiarea processing in the inferotemporal (IT) cortex is thought
to be critical for transforming sensory inputs into useful representations of the
world. What are the formats of these neural representations and how are they computed
...
Social Sciences
How does social network structure amplify or stifle behavior diffusion? Existing theory
suggests that when social reinforcement makes the adoption of behavior more likely,
it should spread more—both farther and faster—on clustered networks with redundant
...
Biological Sciences
Agricultural Sciences
To adapt to seasonal changes, many animals, particularly insects, enter a dormancy-like
condition known as diapause, which is primarily accomplished by sensing photoperiodic
signals. The circadian clock, which is driven by positive regulators Clock (CLK) ...
Anthropology
Historically, it was widely assumed that males dominate females socially in most mammals.
However, recent studies revealed significant variation within and among species, opening
new possibilities to explore the extent and drivers of sex biases in ...
Applied Biological Sciences
The Sterile Insect Technique (SIT) is a species-specific and environmentally friendly
method for effectively controlling pest insect populations based on releasing reared,
sterile insects into infested areas. Sex sorting in rearing facilities, enabling ...
Biochemistry
Aberrant aggregates of the 42-residue form of the amyloid-β peptide (Aβ42) are cytotoxic in Alzheimer’s disease (AD). Cost-effective and chronically safe disease-modifying
therapeutics are needed to address the AD medical emergency worldwide. To increase
...
Peptidoglycan (PG), a defining feature of the bacterial cell envelope, is crucial
for cell integrity and morphology. PG is a macromolecular mesh consisting of glycan
polymers crosslinked by short peptides encasing the cytoplasmic membrane. PG peptides
...
Excessive degradation of the colonic mucin layer by Bacteroides within the human gut microbiota drives inflammatory bowel disease (IBD) in mice.
Bacterial carbohydrate sulfatases are key enzymes in gut colonization, and they are
elevated in human IBD and ...
Biophysics and Computational Biology
The ciliated epithelium of the human respiratory tract is covered by the airway surface
liquid, a protective fluid consisting of two layers: the periciliary layer (PCL),
where motile cilia reside and generate fluid flow, and an overlying mucus layer. The
...
In superresolution optical fluctuation imaging (SOFI), molecules spaced closer than
the diffraction limit can be separated through spatial and temporal correlation analysis
of the fluorescence intensity fluctuations. The resolution and speed of SOFI ...
In chemotaxis, motile bacteria recognize external molecules and move toward favorable
concentrations. Chemoreceptors form complexes that perform transmembrane signaling,
control a histidine kinase, and undergo posttranslational adaptational modifications.
...
In order to proliferate, bacteria must remodel their cell wall at the division site.
The division process is driven by the enzymatic activity of peptidoglycan synthases
and hydrolases around the constricting Z-ring. We introduce a morphoelastic model
that ...
Photosynthesis, the fundamental process sustaining life on Earth, depends on the photosystem
II (PSII) reaction center’s ability to initiate the charge transport process. In this
study, we have investigated this charge transport process with a focus on ...
The C-terminal tail of cardiac troponin T (C-cTnT) inhibits thin filament activation
and is a hotspot for cardiomyopathic mutations and variants. The mechanism whereby
this region limits activation is not well understood. The last 16 C-terminal residues
...
Single-domain antibodies, such as variable heavy domain of heavy chain (VHH) domains
from camelids, are an attractive platform for therapeutic purposes. VHHs have a smaller
size than traditional antibodies, which harbors certain advantages such as tissue
...
The fidelity of template-dependent mRNA synthesis during transcription elongation
is the primary determinant of accurate gene expression and the maintenance of functional
RNA transcripts. However, the mechanisms governing transcription fidelity remain ...
Small noncoding RNAs (sRNAs) regulate gene expression in Escherichia coli bacteria in response to diverse stimuli in the environment and the host. Most sRNAs
regulate mRNA expression by directly base pairing with complementary sites in the
target mRNA ...
Cell Biology
CDK12 primarily functions as a transcription regulatory cyclin-dependent kinase (CDK)
that controls mRNA elongation, splicing, and polyadenylation. The CDK12 gene is implicated in human cancers since it is frequently mutated and/or deleted
in prostate and ...
Head and neck squamous cell carcinoma (HNSCC) is a common and aggressive malignancy.
While significant advances have been made in the management of low-grade cancer, treatment
of advanced HNSCC remains challenging. Here, we used a proteomic approach to ...
To uncover substrates mediating the oncogenic activity of WWP1 in acute myeloid leukemia
(AML), we performed a proteomic analysis that identified the histone demethylase KDM5B/JARID1B as a candidate target. Of note, JARID1B is indispensable for efficient ...
Despite extensive efforts to develop strategies to inhibit cancer metastasis—the leading
cause of cancer-related deaths—progress has been limited in recent decades. Epithelial-to-mesenchymal
transition (EMT) initiates metastasis by enhancing the migratory ...
Mycophenolic acid (MPA) is commonly used in immunosuppressive regimens following solid
organ transplantation. We demonstrate that MPA treatment reproducibly inhibits the
replication of a range of viruses, including severe respiratory syndrome coronavirus
...
Accumulation of cytosolic DNA has emerged as a hallmark of aging, inducing sterile
inflammation. Stimulator of interferon genes (STING) protein translates the sensing
of cytosolic DNA by cyclic-GMP-AMP synthase (cGAS) into an inflammatory response.
...
Developmental Biology
Mechanical forces are ubiquitous and essential during vertebrate development, yet
how these forces are translated into biochemical signals and regulate development
during postnatal organogenesis remains poorly understood. While early embryogenesis
relies ...
The mammalian auditory system relies on the precise architecture of the hair cell
stereociliary bundle for effective sound transduction. Each bundle consists of approximately
100 actin-filled stereocilia arranged in a three-row staircase pattern, forming ...
The mammalian cochlea loses its ability to regenerate hair cells (HCs) after birth.
In contrast, in the avian auditory epithelium, the basilar papilla (BP), supporting
cells (SCs) retain the capability for HC regeneration throughout life. Our previous
...
Identifying aging-associated biomarkers applicable for multiple tissues is challenging
but crucial for assessing tissue aging. Here, we obtained and analyzed 456 transcriptomes
on 17 organs from 30 C57BL/6 J mice with different ages, revealing the ...
Ecology
Quantifying species’ niches across a clade reveals how environmental tolerances evolve,
and offers insights into present and future distributions. We use herbarium specimens
to explore climate niche evolution across 14 annual species of the Streptanthus (...
Northeastern US temperate forests are currently net carbon (C) sinks and play an important
role offsetting anthropogenic C emissions, but projected climatic changes, including
increased temperatures and decreased winter snowpack, may influence this C sink ...
Inferring coexistence metrics, such as niche and fitness differences, in changing
environments is key for understanding the mechanism behind species coexistence and
predicting its likelihood. However, it first requires estimating the per capita ...
Environmental Sciences
Nutrient (nitrogen and phosphorus) pollution is an environmental problem of global
concern because overenrichment of water bodies increases phytoplankton biomass and
ecosystem metabolism, depletes oxygen in bottom waters, and increases the frequency
and ...
Evolution
Hovering, the ability to maintain a stationary position in fluid, is essential for
many fish species during prey capture, habitat exploration, and mating. While traditionally
assumed to be energetically inexpensive for fishes with a swim bladder, the ...
Genetics
The Norwegian lemming (Lemmus lemmus) is a small rodent distributed across the Fennoscandian mountain tundra and the Kola
Peninsula. The Norwegian lemming likely evolved during the Late Pleistocene and inhabited
Fennoscandia shortly prior to the Last ...
Immunology and Inflammation
Over 65 million individuals worldwide are estimated to have Long COVID (LC), a complex
multisystemic condition marked by fatigue, post-exertional malaise, and other symptoms
resembling myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS). With no ...
The gut microbiota is highly dynamic during the first year of life and plays a crucial
role in immune development. Breastfeeding is known to support infant health, but the
contributions of the numerous breastmilk components to gut microbiota and immune ...
Virus-induced excessive inflammatory response is a key contributor to pathology in
respiratory viral infections. However, the underlying mechanisms by which viral infection
provokes intense inflammatory reaction and how sustained inflammation leads to ...
Lung cancers and melanomas have many somatically mutated self-proteins that would
be expected to trigger an immune rejection response, yet therapeutic responses can
only be induced in a subset of patients. Here, we investigated the possibility that
...
Medical Sciences
Glioma is the most common primary malignant brain tumor and preoperative genetic profiling
is essential for the management of glioma patients. Our study focused on tumor regions
segmentation and predicting the World Health Organization (WHO) grade, ...
The tissue hormone acyl coenzyme A–binding protein (ACBP, encoded by the gene diazepam-binding inhibitor, DBI) has been implicated in various facets of pathological aging. Here, we show
that ACBP plasma concentrations are elevated in (close-to-)...
The regulation of metabolism in peripheral tissues is intricately linked to circadian
rhythms, with hypoxia-inducible factor-1α (HIF1α) implicated in modulating time-of-day-specific
exercise responses. To investigate this relationship, we generated a ...
Cancer immunotherapy has shown tremendous promise in various cancers. However, current
strategies, such as immune checkpoint blockade, primarily restore exhausted T cells
but provide only transient efficacy, as the rapid clearance of antibodies. Their ...
Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) and long COVID are persistent
multisystem illnesses affecting many patients. With no known effective FDA-approved
treatments for either condition, patient-reported outcomes of treatments may ...
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The mitotic inhibitor docetaxel (DTX) is often used to treat endocrine-refractory
metastatic breast cancer, but initial responses are mitigated as patients develop
disease progression. Using a cohort of ex vivo cultured circulating tumor cells (CTCs)
from ...
Bone regeneration continues to be a challenge due to the complex nature of the tissue.
Identifying new materials that stimulate regeneration while providing mechanical properties
is an active area of research. One class of promising material in bone ...
Microbiology
Dengue is the most prevalent arthropod-borne viral disease of humans, with over half
the world’s population at risk. Infection with any of the four dengue virus (DENV)
serotypes is most often self-limiting, but a significant number of cases present with
...
Influenza A viruses (IAVs) pose a significant public health threat, with host factors
playing a crucial role in disease severity. We investigated the role of Bcl-2-interacting
killer (BIK) in IAV infection using cellular and mouse models, and influenza-...
The human endogenous retrovirus K (HERV-K) is a retrovirus that got assimilated into
the human genome in ancient times and has been inherited in our germline ever since.
It enters cells using a class-I spike protein (Env) that mediates receptor ...
Neuroscience
Stimulus-driven, multiarea processing in the inferotemporal (IT) cortex is thought
to be critical for transforming sensory inputs into useful representations of the
world. What are the formats of these neural representations and how are they computed
...
Performance typically peaks at moderate arousal levels, consistent with the Yerkes–Dodson
law, as confirmed by recent human and mouse pupillometry studies. Arousal states are
influenced by neuromodulators like catecholamines (noradrenaline and dopamine) ...
Autophagic dysfunction is a hallmark of neurodegenerative disease, leaving neurons
vulnerable to the accumulation of damaged organelles and aggregated proteins. However,
the late onset of diseases suggests that compensatory quality control mechanisms may
...
Natural language unfolds over multiple nested timescales: Words form sentences, sentences
form paragraphs, and paragraphs build into full narratives. Correspondingly, the brain
exhibits a hierarchy of processing timescales, spanning from lower- to higher-...
Pain is both a sensory and emotional experience caused by various harmful stimuli.
While numerous studies have explored peripheral and central pain mechanisms, the specific
neural circuits linking the spinal cord to the brain remain poorly defined. In ...
The maintenance of excitatory synaptic activity is crucial for cognitive function
and genetic mutations are responsible for the pathogenesis of related brain disorders.
However, the roles of these pathogenic factors in synaptic dysregulation and cognitive
...
Glycogen is the largest energy reserve in the brain, but the specific role of glycogen
in supporting neuronal energy metabolism in vivo is not well understood. We established
a system in Caenorhabditis elegans to dynamically probe glycolytic states in ...
Pharmacology
Allosteric modulation of G protein–coupled receptors (GPCRs) is an exciting strategy
for developing new therapeutic agents, and it has several advantages over more commonly
used orthosteric drugs. Recently determined GPCR structures have revealed ...
Physiology
The cardiac sodium–calcium exchanger (NCX1) is a critical regulator of intracellular
calcium (Ca) in cardiomyocytes. Although strongly regulated by pH, the role of NCX1
pH sensitivity in cardiac function and intracellular Ca regulation is not understood.
...
The intestinal-derived hormone motilin, a peptide belonging to the ghrelin family,
induces strong gastric contractions and hunger sensations. However, whether motilin
regulates food intake and its association with gastric motility remains unclear. Rodents
...
Progesterone receptor (PR)-mediated progesterone (P4) signaling plays a crucial role
in the establishment of uterine receptivity which is the prerequisite for successful
embryo implantation in mammals. However, detailed molecular mechanisms underlying
PR–...
Plant Biology
In Arabidopsis thaliana, the FLOWERING LOCUS T (FT) gene encodes florigen, a floral stimulus that integrates multiple environmental
cues to optimize the timing of flowering, which is crucial for reproductive success.
The FT protein is synthesized in the ...
Fusarium crown rot (FCR) is one of the most serious soil-borne diseases in common wheat and
has caused major wheat yield losses worldwide. Here, we identified an 18.6 kDa heat
shock protein gene (TaHSP18.6) through combining a transcriptome analysis and a ...
Psychological and Cognitive Sciences
How the brain recovers the three-dimensional structure of surfaces and objects from
2D retinal images remains mysterious. Shading patterns provide one of the most powerful—yet
least understood—visual depth cues. Most theories assume the brain infers ...
Correction
SI Correction
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