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Table of Contents — June 2, 2026, 123 (22) | PNAS

Table Of Contents Page, PNAS Volume 123, Number 22

Special Feature

Polyploidy and Stress

In native environments, organisms are faced with an array of acute or chronic stresses. These stresses include toxins, pathogens, and physical injury. An increasingly recognized response to diverse stresses is whole genome doubling or polyploidy. This ...
Escalating pressures of global climate change necessitate developing agricultural systems and crop varieties with enhanced resilience. Polyploidy, the state of possessing multiple complete sets of chromosomes arising from whole genome duplication (WGD), ...
Polyploidy, also known as whole genome duplication, is a major evolutionary force in plants, driving diversification and the generation of novel phenotypic variation, including superior abiotic and biotic stress tolerance. The enhanced stress resilience ...
Polyploidization, the consequence of genome doubling, is a macromutation that reshapes genomes, phenotypes, and ecological interactions. Polyploidization often results in novel phenotypes, including alterations in size, physiology, biochemistry, and ...
We recently found that newly formed tetraploid (4N) cells in culture quickly lose extra centrosomes after whole genome doubling (WGD). This is inconsistent with the high incidence of centrosome number abnormalities in human cancers and with the ...
Cell cycle–dependent and independent mechanisms lead to the generation of mononucleated and multinucleated polyploid cells. The more than doubling of a cell’s nuclear genome by endoreplication has been found to be an adaptation to genotoxic stress, ...
Various states of cardiomyocyte (CM) polyploidy have been associated with cardiac injury responses, including regeneration and heart failure. However, our understanding of the comprehensive mechanisms governing CM ploidy and its relationship with heart ...
Cryptococcus neoformans is a fungal pathogen of humans that causes life-threatening meningoencephalitis. During infection, enlarged, polyploid titan cells are produced that promote persistence in the host, in part by resisting phagocytosis; under stress ...
Polyploidy, the presence of more than two sets of chromosomes, has evolved many times across the tree of life, yet we still do not know why some polyploid lineages persist while most go extinct. The establishment of polyploid populations is often reported ...

This Week in PNAS

Opinion

Profile

The Royal Swedish Academy of Sciences awarded the 2025 Nobel Prize in Physics jointly to John Clarke, Michel H. Devoret, and John M. Martinis for their foundational discovery of macroscopic quantum mechanical tunneling and energy quantization in ...

Commentaries

Letters

Brief Reports

The identification of SRD5A3, a causative gene for congenital disorders of glycosylation (CDGs), together with its yeast ortholog DFG10, established the prevailing model that dolichol is synthesized from polyprenol in a single step. Subsequently, a recent ...
Sudden, global reversals in shell coiling direction are a striking and recurrent feature in the fossil record of planktonic foraminifera (marine zooplankton), yet their evolutionary significance has been a mystery. Because coiling direction is a simple, ...
Desert ants and foraging rodents return home along surprisingly direct paths after meandering outward journeys. Traditional path integration models explain this through cumulative vector addition, yet struggle to account for the neurobiological mechanisms ...

Physical Sciences

Applied Mathematics

The complex formations exhibited by schooling fish have long been the object of fascination for biologists and physicists. However, the physical and sensory mechanisms leading to organized collective behavior remain elusive. On the physical side in ...
Fluidic oscillation and flow bistability—classical signatures of nonlinear fluid dynamics—typically occur at high Reynolds numbers, whereas the Rosensweig instability, manifested as spike formation on a ferrofluid surface under a magnetic field, reflects ...
The functioning of complex systems depends on the coordination of diverse components, often supported by regulatory structures that incur costs. In human organizations, such costs manifest as administrative burden, which has been rising despite often ...

Applied Physical Sciences

Moiré superlattices in two-dimensional (2D) materials have been realized through lattice mismatch or rotational misalignment between atomic layers. Here, we extend moiré formation to heterostrain in transition metal dichalcogenides using a scalable ...
Colloidal photonic glasses are attractive as dye-free, solution-processable pigments that show weak angle dependence, but their red hues are notoriously washed out, because single-particle Rayleigh/Mie scattering produces a strong blue background (form ...
The excess vibrational states relative to the Debye model of solids, referred to as the boson peak (BP), are a key feature of glasses and amorphous materials. These excess states underlie anomalous thermal properties such as excess specific heat and low ...

Biophysics and Computational Biology

The processivity of Structural Maintenance of Chromosome complexes defines the characteristic run length and lifetime of loop extrusion events, which set up the large-scale architecture of chromosomes. We introduce an active, non-Markovian mechanistic ...
Epithelial cysts are minimal structures involved in morphogenesis. They are fluid-filled cavities surrounded by an epithelial monolayer. During development, cyst grow and their interactions shape organs. While their growth dynamics as single structures ...
Cells use lamellipodia, thin actin-rich membrane protrusions, to probe the mechanical properties of their microenvironment. During mechanosensing, lamellipodia often exhibit dynamic instability in the form of protrusion-retraction cycles. However, how ...
Although monoculture is a common practice, its fragility, high input requirements, and significant environmental impact underscore the need to seek alternatives. Polyculture, inspired by naturally occurring plant communities, could be one such ...
Spirostomum is a giant unicellular ciliate that contracts to a quarter of its body length in less than five milliseconds, achieving an order of magnitude higher fractional shortening rate than actomyosin-based systems. This ultrafast contraction is ...
The voltage-gated proton (Hv1) channel is crucial in regulating cellular pH, yet the mechanism underlying proton permeation remains controversial. A deeper understanding of the differences between the channel’s active and resting states is essential for ...

Chemistry

The ADP-ribosylation of proteins is a versatile, reversible, posttranslational modification involved in the dynamic regulation of numerous cellular processes. Human ADP-ribosyltransferase 1 (hsART1, EC: 2.4.2.31) is a membrane-associated, GPI-anchored, ...
New particle formation (NPF) in the marine upper troposphere sustains one of the largest global aerosol reservoirs that seeds cloud condensation nuclei in the lower troposphere, with far-reaching implications for Earth’s radiative balance and climate. ...

Computer Sciences

Large language models (LLMs) are rapidly changing academic research, raising questions of who is adopting these tools and under what conditions. This article analyzes full texts of 7.3 million journal articles published from 2020–2025 by four major ...
One Health issues, such as the spread of highly pathogenic avian influenza, present unique challenges at the human–animal–environmental interface. Ongoing H5N1 outbreaks underscore the urgent need for comprehensive modeling efforts that capture the ...

Earth, Atmospheric, and Planetary Sciences

Human activities amplify climate-induced greenhouse gas emissions from small water bodies (SWBs), creating critical but unquantified feedback in the global carbon cycle. Here, by training machine learning models on 470 field observations and upscaling to ...
On Earth, atmospheric oxygen is inferred to have risen over three major intervals before reaching modern levels, with each interval having a profound impact on the evolution of the biosphere. However, the principal driver behind these stepwise increases ...
Self-accelerating turbidity currents (SATCs) are hypothesized to be the primary mechanism for transporting vast amounts of sediment to the deep ocean. However, theoretical predictions of SATCs have preceded field observations by decades, leaving a ...
Aerosol acidity (pH) is a fundamental property governing atmospheric multiphase chemistry, as it influences pollutant partitioning, secondary organic aerosol formation, and trace metal solubility. Thermodynamic models typically assume the internal ...
Convection in porous materials governs heat transport across scales ranging from planetary subsurface systems to engineered cooling devices. While the onset of buoyancy-driven flow is well described by linear stability theory within a porous-continuum ...
Nanophase metallic iron (npFe0) in lunar soils is a key indicator for understanding the space weathering mechanisms of airless bodies. However, the detailed three-dimensional (3D) spatial topology and distribution of layered npFe0 have rarely been ...
During the terminal Pleistocene through Holocene, changes in dietary diversity signaled fundamental shifts in the way humans related to food resources in many parts of the globe. To understand local and regional dietary variation across the transition to ...

Engineering

Aqueous zinc (Zn) batteries are among the most promising candidates for safe, low-cost, and sustainable grid-scale energy storage. However, their practical application is significantly constrained by inhomogeneous Zn electrodeposition and the competitive ...
Filamentous entanglements such as textiles achieve resilience and toughness through topology rather than material composition alone. Yet architected materials rarely exploit dense interlooping and sliding contacts to achieve extraordinary physical ...
Growing global interest in gold (Au) has spurred the development of adsorption processes as sustainable technologies for effective Au recovery from industrial waste. However, the adsorbents used in such processes often require complex fabrication ...

Environmental Sciences

Soil is fundamental to sustaining life on Earth, providing ecosystem services, regulating climate, and playing a central role in global food systems. In the last decades, due to human activities and climate change, soils worldwide have experienced ...

Physics

Recurrence time quantifies the duration required for a physical system to return to its initial state, playing a pivotal role in understanding the predictability of complex systems. In quantum systems with subspace measurements, recurrence times are ...
Pair density wave (PDW) exhibits periodic amplitude and sign modulations of the superconducting order parameter. Such a pairing state has long been proposed to be highly sensitive to nonmagnetic scattering, but its experimental realization remains ...

Sustainability Science

Human activities amplify climate-induced greenhouse gas emissions from small water bodies (SWBs), creating critical but unquantified feedback in the global carbon cycle. Here, by training machine learning models on 470 field observations and upscaling to ...

Social Sciences

Anthropology

During the terminal Pleistocene through Holocene, changes in dietary diversity signaled fundamental shifts in the way humans related to food resources in many parts of the globe. To understand local and regional dietary variation across the transition to ...
The southern coast of Europe has been at the center of archaeological debates contrasting the social and cognitive capabilities of Neanderthals and modern humans. Early evidence of marine resource exploitation by Neanderthals in this region challenged ...

Economic Sciences

Large Language Models (LLMs) such as ChatGPT are transforming how scientists conduct and validate research, offering promise as tools to improve scientific reproducibility. However, computational reproducibility and error detection remain expensive and ...
While the effects of the transition to parenthood are well researched, less is known about how the transition to grandparenthood affects health and labor market outcomes. Using comprehensive Norwegian register data covering the entire population born ...
Using the staggered rollout of China’s one-child policy (OCP) across provinces and birth cohorts as a quasi-natural experiment, we demonstrate that differential fertility between richer and poorer households exacerbates intergenerational income ...

Political Sciences

Sycophants praise and support leaders’ proposals to gain personal and professional advantage. A rational sycophant is an advisor who supports actions they expect to be harmful even when rewards and punishments for good and bad advice are equal in ...

Psychological and Cognitive Sciences

Cultural evolution allows ideas and technologies to accumulate across generations, reaching their most complex and open-ended form in humans. While social learning enables the transmission of such innovations, the cognitive processes that generate them ...
Popularity is a key marker of social status, yet the phenomena that support its emergence within newly forming social groups remain unclear. We combined functional neuroimaging and longitudinal school-wide social network analysis to track adolescents ...
The advancement of science depends on rigorous tests of competing hypotheses, yet many disputes are left unresolved. Adversarial collaboration—where opposing scientists jointly design decisive tests—is one proposed solution. We examine whether large ...
Long-duration space missions expose crews to extreme psychological and social stressors due to prolonged isolation and confinement. To examine how such conditions impact individual and team functioning, we studied a 10-mo Antarctic overwintering mission ...
Our cognitive processes are largely shaped by what is present in our environment, while absences are often overlooked. This fundamental tendency of the human mind can lead to a significant social bias: individuals frequently fail to notice the absence of ...
Individuals are motivated to increase their social status. To succeed in this pursuit, people must track information about others in their social sphere, monitor group norms, and adjust their behavior strategically. This study employed functional MRI and ...

Social Sciences

The functioning of complex systems depends on the coordination of diverse components, often supported by regulatory structures that incur costs. In human organizations, such costs manifest as administrative burden, which has been rising despite often ...
Large language models (LLMs) are rapidly changing academic research, raising questions of who is adopting these tools and under what conditions. This article analyzes full texts of 7.3 million journal articles published from 2020–2025 by four major ...
Do social networks and peer influence shape major life decisions in polarized settings? We explore this question by examining how peers influenced the allegiances of West Point cadets during the American Civil War. Leveraging quasi-random variations in ...

Sustainability Science

As urbanization accelerates, urban blue and green spaces are increasingly recognized as critical nature-based solutions for enhancing human well-being, delivering climate, environmental, and psychological benefits. Yet, the mechanisms by which access to ...
Land conservation initiatives worldwide are poised to continue rapid growth. Ranging in scale, scope, and mechanisms, these efforts include area-based conservation, incentive-based protection, and community collective management. Evidence from across ...

Biological Sciences

Agricultural Sciences

Although monoculture is a common practice, its fragility, high input requirements, and significant environmental impact underscore the need to seek alternatives. Polyculture, inspired by naturally occurring plant communities, could be one such ...

Anthropology

The southern coast of Europe has been at the center of archaeological debates contrasting the social and cognitive capabilities of Neanderthals and modern humans. Early evidence of marine resource exploitation by Neanderthals in this region challenged ...

Applied Biological Sciences

mRNA-based gene editing therapeutics offer the potential to permanently cure diseases but are hindered by suboptimal delivery platforms. Here, we devise a robust combinatorial chemistry for the plug-and-play assembly of structurally diverse biodegradable ...

Biochemistry

The ADP-ribosylation of proteins is a versatile, reversible, posttranslational modification involved in the dynamic regulation of numerous cellular processes. Human ADP-ribosyltransferase 1 (hsART1, EC: 2.4.2.31) is a membrane-associated, GPI-anchored, ...
Engineering CRISPR-Cas systems for improved or altered function is critical to both research and therapeutic applications. Unfortunately, most optimization, especially directed evolution in bacterial hosts, fails to capture the functional requirements of ...
5-Methylpyrimidine dioxygenases (5mYOXs) are iron (II)/2-oxoglutarate-dependent enzymes that catalyze the postreplicative oxidation of DNA 5-methylpyrimidines. Here, we define two subclasses of phage thymine (T) 5mYOXs: a stand-alone enzyme and a second ...
Severing enzymes nanodamage microtubules by extracting tubulin subunits. This extraction is accompanied by spontaneous repair with soluble tubulin. Here, we show that GTP-, and not GDP–tubulin, incorporates preferentially at nanodamage sites where it ...
Self-assembling protein cages are valuable nanoscale containers for biotechnology and medical applications. Two-component systems are especially attractive due to their potential for functional complexity. In this study, we demonstrate that the subunits ...

Biophysics and Computational Biology

The complex formations exhibited by schooling fish have long been the object of fascination for biologists and physicists. However, the physical and sensory mechanisms leading to organized collective behavior remain elusive. On the physical side in ...
The processivity of Structural Maintenance of Chromosome complexes defines the characteristic run length and lifetime of loop extrusion events, which set up the large-scale architecture of chromosomes. We introduce an active, non-Markovian mechanistic ...
Amyloid formation and liquid–liquid phase separation (LLPS) are two important phenomena in cellular biology, linked to both normal physiological functions and various pathologies. Here, we present a computational framework that scores amyloid propensities ...
Accurately predicting the fitness effects of high-order mutations is a grand challenge in understanding and engineering proteins. Existing models, including pretrained protein language models, struggle to capture the multiresidue interactions that govern ...
Bacterial fimbrial adhesins such as FimH are critical for host colonization and persistence under the mechanical forces encountered at sites of infection such as the urinary tract. The molecular mechanisms by which FimH, a key virulence factor of ...

Cell Biology

Spirostomum is a giant unicellular ciliate that contracts to a quarter of its body length in less than five milliseconds, achieving an order of magnitude higher fractional shortening rate than actomyosin-based systems. This ultrafast contraction is ...
The voltage-gated proton (Hv1) channel is crucial in regulating cellular pH, yet the mechanism underlying proton permeation remains controversial. A deeper understanding of the differences between the channel’s active and resting states is essential for ...
Lysine lactylation regulates protein fate and function across diverse biological processes. While PD-L1 has been widely studied posttranslationally, the role of its lactylation and the responsible enzyme have remained poorly studied. Here, we identify ...
Fatty acids undergo re-esterification to form triglycerides or are directly oxidized for energy production following absorption. Fatty acid binding protein 1 (FABP1), a key transporter highly expressed in both hepatic and intestinal tissues, directs the ...
Interpreting missense variants in highly conserved, paralog-rich gene families remains a major barrier to understanding protein function and advancing precision medicine. Here, we combine comprehensive mutagenesis, high-content live-cell imaging, and ...
Neurofibromin, the protein product of the neurofibromatosis type 1 (NF1) gene, requires the direct binding interaction with SPRED to negatively regulate the RAS-MAPK pathway. Although the region of neurofibromin that stimulates the intrinsic GTPase ...

Developmental Biology

Rapid activation of ERK (extracellular signal-regulated kinase) signaling drives transcriptional responses to injury across metazoans. Yet, it is unclear whether key aspects of ERK as a wound signal—its upstream inputs, activating cell type(s), and ...
CRISPR/Cas9-based mosaic analysis is a powerful tool for in vivo genetics but is limited by cytotoxicity and mutagenesis associated with DNA double-strand breaks. Here, we establish Cas9-derived nickases as safer and more reliable alternatives for ...
Endogenous bioelectric currents regulate development and regeneration, but their influence on organismal longevity and stem cell–mediated repair is not well understood. We demonstrate that a brief, clinically safe pulse of electrical current (PEC) ...

Ecology

Identifying overarching processes that maintain biodiversity in natural communities remains a challenge in ecology. Although functional traits help explain regional species distributions, they often fall short at the local community level. We investigate ...
The escalating biodiversity crisis underscores the urgent need for a unified framework that links the mechanisms maintaining biodiversity to its functional consequences. However, studies of species coexistence and biodiversity effects on ecosystem ...

Environmental Sciences

As urbanization accelerates, urban blue and green spaces are increasingly recognized as critical nature-based solutions for enhancing human well-being, delivering climate, environmental, and psychological benefits. Yet, the mechanisms by which access to ...

Evolution

Cultural evolution allows ideas and technologies to accumulate across generations, reaching their most complex and open-ended form in humans. While social learning enables the transmission of such innovations, the cognitive processes that generate them ...
Many organisms reproduce through noncanonical modes such as parthenogenesis or hybridogenesis (clonal transmission of one parent’s chromosomes), but whether these arise abruptly or stepwise from each other remains unclear. We address this in the stick-...
High-latitude terrestrial ecosystems are commonly viewed as marginal environments to deep-time evolutionary innovation, yet their role in shaping biotic dispersal, diversification, and survivorship remains poorly understood. The Upper Cretaceous Prince ...
Predicting the genetic consequences of population decline is a major problem in conservation genomics. Time lags following demographic bottlenecks can delay genomic erosion and make it difficult to determine a population’s current and future risk, ...
Biological communities are complex, dynamic systems that underpin ecosystem functionality, yet their long-term dynamics and predictability remain poorly understood. Understanding how Darwinian evolution shapes these systems through eco-evolutionary ...

Genetics

DNA G-quadruplexes (G4s) are non-B-form secondary DNA structures that are prevalent at key regulatory regions in mammalian genome and are highly conserved across evolution. However, the mechanisms by which G4s contribute to distinct facets of genome ...

Immunology and Inflammation

Phosphatidylethanolamine (PE) biosynthesis is critical for membrane biology and cellular homeostasis. However, its specific role in antiviral innate immunity remains poorly understood. Here, we demonstrate that inhibition of phosphoethanolamine ...
Immunity following infection with the four dengue virus serotypes (DENV1-4) remains difficult to define. Reports of individuals being reinfected with the same serotype challenge the paradigm that infection induces lifelong homotypic immunity. However, the ...

Medical Sciences

The prevalence of Mycobacterium abscessus (MABS) infections in people with cystic fibrosis (pwCF) is increasing. Macrophages are key phagocytic cells that recognize bacteria via cell surface receptors, engulf them into phagosomes, and then utilize diverse ...
Liver fibrosis, marked by an abnormal buildup of extracellular matrix (ECM), poses a major health threat. Myofibroblasts, predominantly derived from hepatic stellate cells (HSCs) and portal fibroblasts, are the primary drivers of ECM synthesis. Fibroblast ...

Microbiology

Nitrogen exchange between plants and insects is a major component of ecosystem nitrogen cycling. Endophytic insect pathogenic fungi transfer insect-derived nitrogen to plants through symbiotic associations mediated by fungal mycelia, enabling plants to ...
EBV is associated with human B cell lymphomas, including Burkitt lymphomas (BLs), diffuse large B cell lymphomas (DLBCLs), Hodgkin lymphomas (HLs), and Plasmablastic lymphomas (PLs). EBV+ lymphomas in immunocompetent humans are usually derived from ...
Induction of RNA degradation in infected cells is a strategy used by many viruses to promote efficient replication. Vaccinia virus, the prototype poxvirus and the vaccine platform for smallpox and mpox, encodes two decapping enzymes to accelerate mRNA and ...
Bacteria often proliferate within confined spaces imposed by host tissues, extracellular matrices, or their own biofilms where cells press against surrounding materials and experience elevated mechanical stress. Whether these forces influence pathogen ...
Human cytomegalovirus (HCMV) establishes lifelong latency, during which immediate-early (IE) gene expression is strongly repressed. IE1 and IE2 are considered master regulators of the lytic cycle, yet it remains unclear whether their expression levels are ...

Neuroscience

Conscious thought is often treated as a special class of neural processing, distinct from the nonconscious computations that guide most behavior. Here I offer a different perspective, grounded in the neuroscience of decision-making. I argue that conscious ...
Maintaining balance requires a complex interplay between sensory and motor processes, and this ability deteriorates with age, impairing daily life activities and contributes to increased fall risks. Importantly, while cognitive-motor interference ...
Circadian rhythms are ubiquitous, and most of the organs in the body contain circadian oscillators. The intestine comprises diverse cell types with distinct developmental origins and physiological functions. However, which intestinal cells contain cell-...
Major depressive disorder (MDD) is characterized by symptom heterogeneity and sex differences in prevalence. To gain insight into these sex differences, we utilized the subchronic variable stress paradigm (SCVS) in which female mice are susceptible, while ...
Motor learning involves the dynamic reconfiguration of brain activity across widely distributed networks. Yet, the moment-to-moment evolution of the whole-brain functional states underpinning this process remains unknown. Here, applying manifold-based ...
The ventromedial hypothalamus (VMH) is a key regulator of energy homeostasis, linking central neural activity to peripheral metabolic function. Within the VMH, neurons expressing steroidogenic factor-1 (SF-1; VMHSF1) are essential for regulating energy ...
Photovoltaic subretinal prosthesis can restore central vision in patients blinded by age-related macular degeneration with letter acuity matching its 100 µm pixel size. Improving resolution requires smaller pixels, but to still reach the target neurons, ...
As a basic unit of the nervous system, the sensory-motor reflex circuit is fast and robust. However, it is not entirely clear how this robustness is achieved, given that various genetic perturbations can alter the function of the sensory neurons. By ...
Long-term potentiation (LTP) is a lasting form of synaptic plasticity that can persist for hours or even days. It is associated with structural changes in both the presynaptic terminal and the postsynaptic spine. Presynaptically, the number and ...

Plant Biology

In bacteria, protein mistranslation can improve stress tolerance. Mitochondria and plastids evolved from bacteria and use a prokaryotic-type expression machinery to synthesize proteins. Interestingly, fungi and animal mitochondria are highly sensitive to ...
Dietary deficiencies in essential micronutrients and other phytonutrients represent a global health and economic burden, contributing to “hidden hunger” and chronic diseases. While genome editing has been employed to improve individual nutritional traits ...

Psychological and Cognitive Sciences

Individuals are motivated to increase their social status. To succeed in this pursuit, people must track information about others in their social sphere, monitor group norms, and adjust their behavior strategically. This study employed functional MRI and ...
Reading is central to academic and vocational success. Some deaf children face reading challenges due to limited access to spoken or signed language. Robust phonological representations are key to reading development in hearing children. Spoken language ...

Sustainability Science

Soil is fundamental to sustaining life on Earth, providing ecosystem services, regulating climate, and playing a central role in global food systems. In the last decades, due to human activities and climate change, soils worldwide have experienced ...

Systems Biology

One Health issues, such as the spread of highly pathogenic avian influenza, present unique challenges at the human–animal–environmental interface. Ongoing H5N1 outbreaks underscore the urgent need for comprehensive modeling efforts that capture the ...
Genetic variants near Hedgehog interacting protein (HHIP) have been consistently associated with increased risk for chronic obstructive pulmonary disease (COPD), the third leading cause of death worldwide. However, HHIP’s role in COPD pathogenesis remains ...

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