This page is brought to you by Brian Golding (Golding@McMaster.CA) and is copied locally here to speed your access. To go to the original page (should you find something interesting or should you wish to follow links) click on

Current Issue of Genome Research

Table of Contents — May 2024, 34 (5)

Table of Contents

May 2024; 34 (5)

Mini-Review

  • Toward telomere-to-telomere cat genomes for precision medicine and conservation biology

    • William J. Murphy and
    • Andrew J. Harris
    Genome Res. May 2024 34: 655-664; Published in Advance June 7, 2024, doi:10.1101/gr.278546.123

Research

  • Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy

    • Lujia Chen,
    • Xiangduo Kong,
    • Kevin G. Johnston,
    • Ali Mortazavi,
    • Todd C. Holmes,
    • Zhiqun Tan,
    • Kyoko Yokomori,
    • and Xiangmin Xu
    Genome Res. May 2024 34: 665-679; Published in Advance May 22, 2024, doi:10.1101/gr.278717.123
    OPEN ACCESS ARTICLE

  • Machine learning identifies activation of RUNX/AP-1 as drivers of mesenchymal and fibrotic regulatory programs in gastric cancer

    • Milad Razavi-Mohseni,
    • Weitai Huang,
    • Yu A. Guo,
    • Dustin Shigaki,
    • Shamaine Wei Ting Ho,
    • Patrick Tan,
    • Anders J. Skanderup,
    • and Michael A. Beer
    Genome Res. May 2024 34: 680-695; Published in Advance May 22, 2024, doi:10.1101/gr.278565.123

  • Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice

    • Leandros Boukas,
    • Teresa Romeo Luperchio,
    • Afrooz Razi,
    • Kasper D. Hansen,
    • and Hans T. Bjornsson
    Genome Res. May 2024 34: 696-710; Published in Advance May 3, 2024, doi:10.1101/gr.278416.123

  • Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

    • Satyam P. Srivastav,
    • Cédric Feschotte,
    • and Andrew G. Clark
    Genome Res. May 2024 34: 711-724; Published in Advance May 15, 2024, doi:10.1101/gr.278062.123

  • Genome-wide profiles of H3K9me3, H3K27me3 modifications, and DNA methylation during diapause of Asian corn borer (Ostrinia furnacalis)

    • Pengfei Lv,
    • Xingzhuo Yang,
    • Xianguo Zhao,
    • Zhangwu Zhao,
    • and Juan Du
    Genome Res. May 2024 34: 725-739; Published in Advance June 12, 2024, doi:10.1101/gr.278661.123

  • Semiconservative transmission of DNA N6-adenine methylation in a unicellular eukaryote

    • Yalan Sheng,
    • Yuanyuan Wang,
    • Wentao Yang,
    • Xue Qing Wang,
    • Jiuwei Lu,
    • Bo Pan,
    • Bei Nan,
    • Yongqiang Liu,
    • Fei Ye,
    • Chun Li,
    • Jikui Song,
    • Yali Dou,
    • Shan Gao,
    • and Yifan Liu
    Genome Res. May 2024 34: 740-756; Published in Advance May 14, 2024, doi:10.1101/gr.277843.123

Methods

  • GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes

    • Tomáš Brůna,
    • Alexandre Lomsadze,
    • and Mark Borodovsky
    Genome Res. May 2024 34: 757-768; Published in Advance June 12, 2024, doi:10.1101/gr.278373.123
    OPEN ACCESS ARTICLE

  • BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA

    • Lars Gabriel,
    • Tomáš Brůna,
    • Katharina J. Hoff,
    • Matthis Ebel,
    • Alexandre Lomsadze,
    • Mark Borodovsky,
    • and Mario Stanke
    Genome Res. May 2024 34: 769-777; Published in Advance June 12, 2024, doi:10.1101/gr.278090.123
    OPEN ACCESS ARTICLE

  • Simulation of nanopore sequencing signal data with tunable parameters

    • Hasindu Gamaarachchi,
    • James M. Ferguson,
    • Hiruna Samarakoon,
    • Kisaru Liyanage,
    • and Ira W. Deveson
    Genome Res. May 2024 34: 778-783; Published in Advance May 1, 2024, doi:10.1101/gr.278730.123
    OPEN ACCESS ARTICLE

  • Identifying genes within pathways in unannotated genomes with PaGeSearch

    • Sohyoung Won,
    • Jaewoong Yu,
    • and Heebal Kim
    Genome Res. May 2024 34: 784-795; Published in Advance June 10, 2024, doi:10.1101/gr.278566.123
    OPEN ACCESS ARTICLE

Resource

  • A harmonized public resource of deeply sequenced diverse human genomes

    • Zan Koenig,
    • Mary T. Yohannes,
    • Lethukuthula L. Nkambule,
    • Xuefang Zhao,
    • Julia K. Goodrich,
    • Heesu Ally Kim,
    • Michael W. Wilson,
    • Grace Tiao,
    • Stephanie P. Hao,
    • Nareh Sahakian,
    • Katherine R. Chao,
    • Mark A. Walker,
    • Yunfei Lyu,
    • gnomAD Project Consortium,
    • Heidi L. Rehm,
    • Benjamin M. Neale,
    • Michael E. Talkowski,
    • Mark J. Daly,
    • Harrison Brand,
    • Konrad J. Karczewski,
    • Elizabeth G. Atkinson,
    • and Alicia R. Martin
    Genome Res. May 2024 34: 796-809; Published in Advance May 15, 2024, doi:10.1101/gr.278378.123

Erratum

  • Erratum: Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic

    • Jim Shaw and
    • Yun William Yu
    Genome Res. May 2024 34: 810; doi:10.1101/gr.279618.124
    OPEN ACCESS ARTICLE

This Issue

May 2024; 34 (5)
Cover
  1. Mini-Review
  2. Research
  3. Methods
  4. Resource
  5. Erratum

Find articles in this issue containing these words:

Preprint Server



Current Issue

  1. May 2024, 34 (5)
  1. Current Issue
  1. Alert me to new issues of Genome Research