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Molecular Biology and Evolution  
Volume 38 Issue 11
 
November 2021
 
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Fast Track
 
 
 
An Independent Evolutionary Origin for Insect Deterrent Cucurbitacins in Iberis amara border= 
 
Lemeng Dong; Aldo Almeida; Jacob Pollier ; Bekzod Khakimov; Jean-Etienne Bassard ...
 
 
 
Perspectives
 
 
 
Evolutionary Sparse Learning for Phylogenomics border= 
 
Sudhir Kumar; Sudip Sharma
 
 
 
Discoveries
 
 
 
Genomic Evidence for Speciation with Gene Flow in Broadcast Spawning Marine Invertebrates border= 
 
Shotaro Hirase; Yo Y Yamasaki; Masashi Sekino ; Masato Nishisako; Minoru Ikeda ...
 
 
An Analysis of Methylome Evolution in Primates border= 
 
Arne Sahm; Philipp Koch; Steve Horvath; Steve Hoffmann
 
 
Whole-Genome Duplication Facilitated the Evolution of C4 Photosynthesis in Gynandropsis gynandra border= 
 
Chi-Fa Huang; Wen-Yu Liu; Mei-Yeh Jade Lu ; Yi-Hua Chen; Maurice S B Ku ...
 
 
 
Plastic Rewiring of Sef1 Transcriptional Networks and the Potential of Nonfunctional Transcription Factor Binding in Facilitating Adaptive Evolution border= 
 
Po-Chen Hsu; Tzu-Chiao Lu; Po-Hsiang Hung ; Yu-Ting Jhou; Ahmed A A Amine ...
 
 
DLX5/6 GABAergic Expression Affects Social Vocalization: Implications for Human Evolution border= 
 
Giovanni Levi; Camille de Lombares; Cristina Giuliani ; Vincenzo Iannuzzi; Rym Aouci ...
 
 
Direct Molecular Evidence for an Ancient, Conserved Developmental Toolkit Controlling Posttranscriptional Gene Regulation in Land Plants border= 
 
Haiyan Jia; Kelsey Aadland; Oralia Kolaczkowski ; Bryan Kolaczkowski
 
 
Natural Selection Shapes Maintenance of Orthologous sRNAs in Divergent Host-Restricted Bacterial Genomes border= 
 
Margaret W Thairu; Venkata Rama Sravani Meduri; Patrick H Degnan ; Allison K Hansen
 
 
Mistranslation Reduces Mutation Load in Evolving Proteins through Negative Epistasis with DNA Mutations border= 
 
Jia Zheng; Ning Guo; Andreas Wagner
 
 
 
Highly Replicated Evolution of Parapatric Ecotypes border= 
 
Maddie E James; Henry Arenas-Castro; Jeffrey S Groh; Scott L Allen ; Jan Engelstädter ...
 
 
Global Genetic Heterogeneity in Adaptive Traits border= 
 
William Andres Lopez-Arboleda; Stephan Reinert; Magnus Nordborg; Arthur Korte
 
 
Genome Analysis Traces Regional Dispersal of Rice in Taiwan and Southeast Asia border= 
 
Ornob Alam; Rafal M Gutaker; Cheng-Chieh Wu; Karen A Hicks ; Kyle Bocinsky ...
 
 
Nemertean, Brachiopod, and Phoronid Neuropeptidomics Reveals Ancestral Spiralian Signaling Systems border= 
 
Daniel Thiel; Luis A Yañez-Guerra; Mirita Franz-Wachtel ; Andreas Hejnol; Gáspár Jékely
 
 
Two Reference-Quality Sea Snake Genomes Reveal Their Divergent Evolution of Adaptive Traits and Venom Systems border= 
 
An Li; Junjie Wang; Kuo Sun ; Shuocun Wang; Xin Zhao ...
 
 
Whole-Genome Sequencing Reveals Lactase Persistence Adaptation in European Dogs border= 
 
Yan-Hu Liu; Lu Wang; Zhiguo Zhang; Newton O Otecko ; Saber Khederzadeh ...
 
 
Sexual Antagonism, Temporally Fluctuating Selection, and Variable Dominance Affect a Regulatory Polymorphism in Drosophila melanogaster border= 
 
Amanda Glaser-Schmitt; Meike J Wittmann; Timothy J S Ramnarine ; John Parsch
 
 
Genetic Continuity of Bronze Age Ancestry with Increased Steppe-Related Ancestry in Late Iron Age Uzbekistan border= 
 
Vikas Kumar; E Andrew Bennett; Dongyue Zhao ; Yun Liang; Yunpeng Tang ...
 
 
Balancing Selection for Pathogen Resistance Reveals an Intercontinental Signature of Red Queen Coevolution border= 
 
Yann Bourgeois; Peter D Fields; Gilberto Bento ; Dieter Ebert
 
 
Functional Evolution of a Bark Beetle Odorant Receptor Clade Detecting Monoterpenoids of Different Ecological Origins border= 
 
Xiao-Qing Hou; Jothi Kumar Yuvaraj; Rebecca E Roberts ; Dan-Dan Zhang; C Rikard Unelius ...
 
 
Comparative Analysis of Mammal Genomes Unveils Key Genomic Variability for Human Life Span border= 
 
Xavier Farré; Ruben Molina; Fabio Barteri ; Paul R H J Timmers; Peter K Joshi ...
 
 
Evolution of Renal-Disease Factor APOL1 Results in Cis and Trans Orientations at the Endoplasmic Reticulum That Both Show Cytotoxic Effects border= 
 
Daria Müller; Jürgen Schmitz; Katharina Fischer ; Daniel Granado; Ann-Christin Groh ...
 
 
Defective Satellite DNA Clustering into Chromocenters Underlies Hybrid Incompatibility in Drosophila border= 
 
Madhav Jagannathan; Yukiko M Yamashita
 
 
Genome-Wide SNPs Clarify a Complex Radiation and Support Recognition of an Additional Cat Species border= 
 
Fernanda J Trindade; Maíra R Rodrigues; Henrique V Figueiró ; Gang Li; William J Murphy ...
 
 
Endogenous Retroviruses Drive Lineage-Specific Regulatory Evolution across Primate and Rodent Placentae 
 
Ming-an Sun; Gernot Wolf; Yejun Wang; Anna D Senft ; Sherry Ralls ...
 
 
An Ancient Clade of Penelope-Like Retroelements with Permuted Domains Is Present in the Green Lineage and Protists, and Dominates Many Invertebrate Genomes border= 
 
Rory J Craig; Irina A Yushenova; Fernando Rodriguez ; Irina R Arkhipova
 
 
Novel Doublesex Duplication Associated with Sexually Dimorphic Development of Dogface Butterfly Wings border= 
 
Fernando Rodriguez-Caro; Jennifer Fenner; Shivam Bhardwaj ; Jared Cole; Caleb Benson ...
 
 
Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.) border= 
 
Martha Rendón-Anaya; Jonathan Wilson; Sæmundur Sveinsson ; Aleksey Fedorkov; Joan Cottrell ...
 
 
Human-Mediated Admixture and Selection Shape the Diversity on the Modern Swine (Sus scrofa) Y Chromosomes border= 
 
Huashui Ai; Mingpeng Zhang; Bin Yang ; Amy Goldberg; Wanbo Li ...
 
 
The Chicken Pan-Genome Reveals Gene Content Variation and a Promoter Region Deletion in IGF2BP1 Affecting Body Size border= 
 
Kejun Wang; Haifei Hu; Yadong Tian ; Jingyi Li; Armin Scheben ...
 
 
RdRp or RT, That is the Question border= 
 
Mahtab Peyambari; Shengxi Guan; Marilyn J Roossinck
 
 
Coevolution between MHC Class I and Antigen-Processing Genes in Salamanders border= 
 
Gemma Palomar; Katarzyna Dudek; Magdalena Migalska; J W Arntzen ; G Francesco Ficetola ...
 
 
Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul border= 
 
Nicolas Brucato; Mathilde André; Roxanne Tsang; Lauri Saag ; Jason Kariwiga ...
 
 
Is the Genetic Code Optimized for Resource Conservation? border= 
 
Haiqing Xu; Jianzhi Zhang
 
 
Little Evidence the Standard Genetic Code Is Optimized for Resource Conservation border= 
 
Hana Rozhoňová; Joshua L Payne
 
 
Fold Evolution before LUCA: Common Ancestry of SH3 Domains and OB Domains border= 
 
Claudia Alvarez-Carreño; Petar I Penev; Anton S Petrov; Loren Dean Williams
 
 
Noncoding Variation and Transcriptional Plasticity Promote Thermal Adaptation in Oysters by Altering Energy Metabolism border= 
 
Ao Li; Li Li; Ziyan Zhang ; Shiming Li; Wei Wang ...
 
 
 
Methods
 
 
 
An Extended Admixture Pulse Model Reveals the Limitations to Human'Neandertal Introgression Dating border= 
 
Leonardo N M Iasi; Harald Ringbauer; Benjamin M Peter
 
 
Evolution-Based Protein Engineering for Antifungal Peptide Improvement border= 
 
Jing Gu; Noriyoshi Isozumi; Shouli Yuan; Ling Jin ; Bin Gao ...
 
 
Refining Convergent Rate Analysis with Topology in Mammalian Longevity and Marine Transitions border= 
 
Stephen Treaster; Jacob M Daane; Matthew P Harris
 
 
 
Resources
 
 
 
Orthology Clusters from Gene Trees with Possvm border= 
 
Xavier Grau-Bové; Arnau Sebé-Pedrós
 
 
 
Corrigenda
 
 
 
Corrigendum to: Geonomics: Forward-Time, Spatially Explicit, and Arbitrarily Complex Landscape Genomic Simulations border= 
 
Drew E Terasaki Hart; Anusha P Bishop; Ian J Wang
 
 
Corrigendum to: Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design border= 
 
Alan M Rice; Atahualpa Castillo Morales; Alexander T Ho ; Christine Mordstein; Stefanie Mühlhausen ...
 
 
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