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New issue alert
New Impact Factor Announced
We are delighted to reveal that the latest Impact Factor for Nucleic Acids Research has risen to 16.971. To celebrate this new Impact Factor, we have curated a collection of highly cited articles from recent years.
Nucleic Acids Research  
Volume 49 Issue 21
2 December 2021
NAR Breakthrough Article
Engineering large-scale chromosomal deletions by CRISPR-Cas9 border= 
Thomas F Eleveld; Chaimaa Bakali; Paul P Eijk; Phylicia Stathi ; Lianne E Vriend ...
Critical Reviews and Perspectives
The nuclear and cytoplasmic activities of RNA polymerase III, and an evolving transcriptome for surveillance 
Alan C Kessler; Richard J Maraia
Chemical Biology and Nucleic Acid Chemistry
Cisplatin fastens chromatin irreversibly even at a high chloride concentration border= 
Hyeon-Min Moon; Jin-Sung Park; Il-Buem Lee; Young-Im Kang ; Hae Jun Jung ...
Enzymatic deamination of the epigenetic nucleoside N6-methyladenosine regulates gene expression border= 
Zhuoran Jiang; Chao Wang; Zixin Wu ; Kun Chen; Wei Yang ...
Structurally constrained phosphonate internucleotide linkage impacts oligonucleotide-enzyme interaction, and modulates siRNA activity and allele specificity border= 
Ken Yamada; Samuel Hildebrand; Sarah M Davis ; Rachael Miller; Faith Conroy ...
7▓,5▓-alpha-bicyclo-DNA: new chemistry for oligonucleotide exon splicing modulation therapy border= 
Damien Evéquoz; Ingrid E C Verhaart; Davy van de Vijver ; Wolfgang Renner; Annemieke Aartsma-Rus ...
Data Resources and Analyses
ImmReg: the regulon atlas of immune-related pathways across cancer types border= 
Tiantongfei Jiang; Weiwei Zhou; Zhenghong Chang; Haozhe Zou ; Jing Bai ...
Gene Regulation, Chromatin and Epigenetics
The human telomeric proteome during telomere replication border= 
Chih-Yi Gabriela Lin; Anna Christina Näger; Thomas Lunardi; Aleksandra Van─Źevska ; Gérald Lossaint ...
Epigenetic regulation of nuclear lamina-associated heterochromatin by HAT1 and the acetylation of newly synthesized histones border= 
Liudmila V Popova; Prabakaran Nagarajan; Callie M Lovejoy ; Benjamin D Sunkel; Miranda L Gardner ...
Chromatin loading of MCM hexamers is associated with di-/tri-methylation of histone H4K20 toward S phase entry border= 
Yoko Hayashi-Takanaka; Yuichiro Hayashi; Yasuhiro Hirano ; Atsuko Miyawaki-Kuwakado; Yasuyuki Ohkawa ...
Relaxed 3D genome conformation facilitates the pluripotent to totipotent-like state transition in embryonic stem cells border= 
Yezhang Zhu; Jiali Yu; Jiahui Gu ; Chaoran Xue; Long Zhang ...
Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq border= 
Laura V Glaser; Mara Steiger; Alisa Fuchs ; Alena van Bömmel; Edda Einfeldt ...
Master lineage transcription factors anchor trans mega transcriptional complexes at highly accessible enhancer sites to promote long-range chromatin clustering and transcription of distal target genes border= 
Shannon M White; Michael P Snyder; Chunling Yi
BAF155 methylation drives metastasis by hijacking super-enhancers and subverting anti-tumor immunity border= 
Eui-Jun Kim; Peng Liu; Shengjie Zhang ; Kristine Donahue; Yidan Wang ...
Genome Integrity, Repair and Replication
TRF2-mediated ORC recruitment underlies telomere stability upon DNA replication stress border= 
Mitsunori Higa; Yukihiro Matsuda; Jumpei Fujii ; Nozomi Sugimoto; Kazumasa Yoshida ...
Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites border= 
Jiao An; Mengdie Yin; Jiayong Yin ; Sizhong Wu; Christopher P Selby ...
The chromatin remodeler RSF1 coordinates epigenetic marks for transcriptional repression and DSB repair border= 
Sunwoo Min; Ho-Soo Lee; Jae-Hoon Ji ; Yungyeong Heo; Yonghyeon Kim ...
Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to chromatin border= 
Hanaa Ghanawi; Luisa Hennlein; Abdolhossein Zare ; Jakob Bader; Saeede Salehi ...
Nucleosomes enter cells by clathrin- and caveolin-dependent endocytosis border= 
Huawei Wang; Xiajing Shan; Mengtian Ren; Mengdi Shang ; Chuanzheng Zhou
Cellular heterogeneity in DNA alkylation repair increases population genetic plasticity border= 
Maxence S Vincent; Stephan Uphoff
Molecular Biology
The hyperthermophilic archaeon Thermococcus kodakarensis is resistant to pervasive negative supercoiling activity of DNA gyrase border= 
Paul Villain; Violette da Cunha; Etienne Villain ; Patrick Forterre; Jacques Oberto ...
Fast interaction dynamics of G-quadruplex and RGG-rich peptides unveiled in zero-mode waveguides border= 
Satyajit Patra; Jean-Benoît Claude; Jean-Valère Naubron ; Jérome Wenger
Cyclophilin acts as a ribosome biogenesis factor by chaperoning the ribosomal protein (PlRPS15) in filamentous fungi border= 
Chenmi Mo; Chong Xie; Gaofeng Wang ; Tian Tian; Juan Liu ...
TRF2 promotes dynamic and stepwise looping of POT1 bound telomeric overhang border= 
Tapas Paul; Wilson Liou; Xinyi Cai; Patricia L Opresko ; Sua Myong
Nucleic Acid Enzymes
A new RNA'DNA interaction required for integration of group II intron retrotransposons into DNA targets border= 
Dario Monachello; Marc Lauraine; Sandra Gillot ; François Michel; Maria Costa
Probing the stability of the SpCas9'DNA complex after cleavage border= 
Pierre Aldag; Fabian Welzel; Leonhard Jakob; Andreas Schmidbauer ; Marius Rutkauskas ...
Discovery of highly reactive self-splicing group II introns within the mitochondrial genomes of human pathogenic fungi border= 
Tianshuo Liu; Anna M Pyle
Efficient DNA interrogation of SpCas9 governed by its electrostatic interaction with DNA beyond the PAM and protospacer border= 
Qian Zhang; Ziting Chen; Fangzhu Wang ; Siqi Zhang; Hongyu Chen ...
RNA and RNA-protein complexes
In vivo architecture of the telomerase RNA catalytic core in Trypanosoma brucei border= 
Abhishek Dey; Anais Monroy-Eklund; Kaitlin Klotz ; Arpita Saha; Justin Davis ...
Evolutionary repair reveals an unexpected role of the tRNA modification m1G37 in aminoacylation border= 
Ben E Clifton; Muhammad A Fariz; Gen-Ichiro Uechi ; Paola Laurino
G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum border= 
Franck Dumetz; Eugene Yui-Ching Chow; Lynne M Harris ; Shiau Wei Liew; Anders Jensen ...
Inhibition of SARS-CoV-2 coronavirus proliferation by designer antisense-circRNAs border= 
Christina Pfafenrot; Tim Schneider; Christin Müller ; Lee-Hsueh Hung; Silke Schreiner ...
The pioneer round of translation ensures proper targeting of ER and mitochondrial proteins border= 
Joori Park; Jeeyoon Chang; Hyun Jung Hwang ; Kwon Jeong; Hyuk-Joon Lee ...
Structural Biology
Broken symmetry between RNA enantiomers in a crystal lattice border= 
Agnieszka Kiliszek; Leszek Błaszczyk; Magdalena Bejger; Wojciech Rypniewski
Revealing A-T and G-C Hoogsteen base pairs in stressed protein-bound duplex DNA border= 
Honglue Shi; Isaac J Kimsey; Stephanie Gu; Hsuan-Fu Liu ; Uyen Pham ...
Functional asymmetry and chemical reactivity of CsoR family persulfide sensors border= 
Joseph N Fakhoury; Yifan Zhang; Katherine A Edmonds; Mauro Bringas ; Justin L Luebke ...
Structural basis of cyclic oligoadenylate degradation by ancillary Type III CRISPR-Cas ring nucleases border= 
Rafael Molina; Anne Louise Grøn Jensen; Javier Marchena-Hurtado ; Blanca López-Méndez; Stefano Stella ...
Synthetic Biology and Bioengineering
Modulating the chemo-mechanical response of structured DNA assemblies through binding molecules border= 
Chanseok Lee; Young-Joo Kim; Kyung Soo Kim ; Jae Young Lee; Do-Nyun Kim
Correction to śBinding of DNA origami to lipids: maximizing yield and switching via strand displacement' border= 
Jasleen Kaur Daljit Singh; Esther Darley; Pietro Ridone ; James P Gaston; Ali Abbas ...
Correction to śMolecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold' border= 
Pauline J Kolbeck; Willem Vanderlinden; Gerd Gemmecker ; Christian Gebhardt; Martin Lehmann ...
Correction to śDNA repair factor XPC is modified by SUMO-1 and ubiquitin following UV irradiation' border= 
Qi-En Wang; Qianzheng Zhu; Gulzar Wani ; Mohamed A El-Mahdy; Jinyou Li ...
Correction to śStructural insights into chromosome attachment to the nuclear envelope by an inner nuclear membrane protein Bqt4 in fission yeast' border= 
Chunyi Hu; Haruna Inoue; Wenqi Sun ; Yumiko Takeshita; Yaoguang Huang ...
Retraction of śInterplay between REST and nucleolin transcription factors: a key mechanism in the overexpression of genes upon increased phosphorylation' border= 
Methods Online
A rapid method to visualize human mitochondrial DNA replication through rotary shadowing and transmission electron microscopy border= 
Martin Kosar; Daniele Piccini; Marco Foiani ; Michele Giannattasio
scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network border= 
Xin Shao; Haihong Yang; Xiang Zhuang ; Jie Liao; Penghui Yang ...
Combinatorial assembly platform enabling engineering of genetically stable metabolic pathways in cyanobacteria border= 
George M Taylor; Andrew Hitchcock; John T Heap
High resolution copy number inference in cancer using short-molecule nanopore sequencing border= 
Timour Baslan; Sam Kovaka; Fritz J Sedlazeck ; Yanming Zhang; Robert Wappel ...
FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers border= 
Linxuan Zhao; Pengwei Xing; Vamsi Krishna Polavarapu ; Miao Zhao; Blanca Valero-Martínez ...
metaGEM: reconstruction of genome scale metabolic models directly from metagenomes border= 
Francisco Zorrilla; Filip Buric; Kiran R Patil ; Aleksej Zelezniak
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