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New Articles in PLOS Computational Biology

PUBLISHED: October 01, 2021 to October 31, 2021

Editorials

Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions

Editorials

Ten simple rules for training yourself in an emerging field

Education

Bioinformatics in Sudan: Status and challenges case study: The National University-Sudan

Education

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

Review

Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns

Research Articles

Separable actions of acetylcholine and noradrenaline on neuronal ensemble formation in hippocampal CA3 circuits

Research Articles

Memory shapes microbial populations

Research Articles

Action planning and control under uncertainty emerge through a desirability-driven competition between parallel encoding motor plans

Research Articles

Choice history effects in mice and humans improve reward harvesting efficiency

Research Articles

Regulation of transcription reactivation dynamics exiting mitosis

Research Articles

The importance of urgency in decision making based on dynamic information

Research Articles

Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites

Research Articles

DeepCellState: An autoencoder-based framework for predicting cell type specific transcriptional states induced by drug treatment

Research Articles

Grey-box modeling and hypothesis testing of functional near-infrared spectroscopy-based cerebrovascular reactivity to anodal high-definition tDCS in healthy humans

Research Articles

Molecular mechanism of proton-coupled ligand translocation by the bacterial efflux pump EmrE

Research Articles

A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC

Research Articles

Comprehensive analysis of lectin-glycan interactions reveals determinants of lectin specificity

Research Articles

Sarc-Graph: Automated segmentation, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes

Research Articles

Recursive MAGUS: Scalable and accurate multiple sequence alignment

Research Articles

Narrative event segmentation in the cortical reservoir

Research Articles

Paranoia, self-deception and overconfidence

Research Articles

Engineering gene overlaps to sustain genetic constructs in vivo

Research Articles

Tracking calcium dynamics from individual neurons in behaving animals

Research Articles

Segmentation-Less, Automated, Vascular Vectorization

Research Articles

Pulsed low-energy stimulation initiates electric turbulence in cardiac tissue

Research Articles

The information theory of developmental pruning: Optimizing global network architectures using local synaptic rules

Research Articles

Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers

Research Articles

Frank-Starling mechanism, fluid responsiveness, and length-dependent activation: Unravelling the multiscale behaviors with an in silico analysis

Research Articles

Cortical feedback and gating in odor discrimination and generalization

Research Articles

qc3C: Reference-free quality control for Hi-C sequencing data

Research Articles

Improved prediction of smoking status via isoform-aware RNA-seq deep learning models

Research Articles

Steady-state measures of visual suppression

Research Articles

Modular assembly of dynamic models in systems biology

Research Articles

Dynamics and turnover of memory CD8 T cell responses following yellow fever vaccination

Research Articles

Interplay between mobility, multi-seeding and lockdowns shapes COVID-19 local impact

Research Articles

Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor

Research Articles

Universal risk phenotype of US counties for flu-like transmission to improve county-specific COVID-19 incidence forecasts

Research Articles

Visual perception of texture regularity: Conjoint measurements and a wavelet response-distribution model

Research Articles

State transitions through inhibitory interneurons in a cortical network model

Research Articles

Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities

Research Articles

Network potential identifies therapeutic miRNA cocktails in Ewing sarcoma

Research Articles

Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes

Research Articles

Factors affecting aerosol SARS-CoV-2 transmission via HVAC systems; a modeling study

Research Articles

Time to revisit the endpoint dilution assay and to replace the TCID50 as a measure of a virus sample's infection concentration

Research Articles

RgCop-A regularized copula based method for gene selection in single cell rna-seq data

Research Articles

Experiment level curation of transcriptional regulatory interactions in neurodevelopment

Research Articles

Estimating ectopic beat probability with simplified statistical models that account for experimental uncertainty

Research Articles

pyActigraphy: Open-source python package for actigraphy data visualization and analysis

Research Articles

A data-driven approach for constructing mutation categories for mutational signature analysis

Research Articles

Extended graphical lasso for multiple interaction networks for high dimensional omics data

Research Articles

How conformity can lead to polarised social behaviour

Research Articles

Atorvastatin-mediated rescue of cancer-related cognitive changes in combined anticancer therapies

Research Articles

Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more

Research Articles

Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits

Research Articles

Better tired than lost: Turtle ant trail networks favor coherence over short edges

Research Articles

PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes

Research Articles

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation

Research Articles

OutbreakFlow: Model-based Bayesian inference of disease outbreak dynamics with invertible neural networks and its application to the COVID-19 pandemics in Germany

Research Articles

NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data

Research Articles

Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics

Research Articles

Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention

Research Articles

Complexity and diversity in sparse code priors improve receptive field characterization of Macaque V1 neurons

Research Articles

Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene

Research Articles

Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study

Research Articles

Using ephaptic coupling to estimate the synaptic cleft resistivity of the calyx of Held synapse

Research Articles

The network structure affects the fixation probability when it couples to the birth-death dynamics in finite population

Research Articles

Spatial heterogeneity enhance robustness of large multi-species ecosystems

Research Articles

Determining travel fluxes in epidemic areas

Research Articles

Synergistic interventions to control COVID-19: Mass testing and isolation mitigates reliance on distancing

Research Articles

Operational response simulation tool for epidemics within refugee and IDP settlements: A scenario-based case study of the Cox's Bazar settlement

Research Articles

Radio-frequency exposure of the yellow fever mosquito (A. aegypti) from 2 to 240 GHz

Research Articles

TwinCons: Conservation score for uncovering deep sequence similarity and divergence

Research Articles

Point-estimating observer models for latent cause detection

Formal Comments

On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading

Formal Comments

The limitations, dangers, and benefits of simple methods for testing identifiability

Correction

Correction: CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models

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