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New Articles in PLOS Computational Biology

PUBLISHED: November 01, 2021 to November 30, 2021

Editorial

Ten simple rules on writing clean and reliable open-source scientific software

Education

The experience of teaching introductory programming skills to bioscientists in Brazil

Education

The meaning of significant mean group differences for biomarker discovery

Research Articles

Nonlinear visuoauditory integration in the mouse superior colliculus

Research Articles

Origami: Single-cell 3D shape dynamics oriented along the apico-basal axis of folding epithelia from fluorescence microscopy data

Research Articles

How the spleen reshapes and retains young and old red blood cells: A computational investigation

Research Articles

A gap-filling algorithm for prediction of metabolic interactions in microbial communities

Research Articles

Mathematical modelling of human P2X-mediated plasma membrane electrophysiology and calcium dynamics in microglia

Research Articles

linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser

Research Articles

From spikes to intercellular waves: Tuning intercellular calcium signaling dynamics modulates organ size control

Research Articles

Burst control: Synaptic conditions for burst generation in cortical layer 5 pyramidal neurons

Research Articles

Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia

Research Articles

Physics-based modeling provides predictive understanding of selectively promiscuous substrate binding by Hsp70 chaperones

Research Articles

Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance

Research Articles

Self-organization of a doubly asynchronous irregular network state for spikes and bursts

Research Articles

Computational redesign of a fluorogen activating protein with Rosetta

Research Articles

The role of competition versus cooperation in microbial community coalescence

Research Articles

Comparison of metabolic states using genome-scale metabolic models

Research Articles

RESCRIPt: Reproducible sequence taxonomy reference database management

Research Articles

Atypically larger variability of resource allocation accounts for visual working memory deficits in schizophrenia

Research Articles

GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction

Research Articles

The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function

Research Articles

Programming cell growth into different cluster shapes using diffusible signals

Research Articles

More pests but less pesticide applications: Ambivalent effect of landscape complexity on conservation biological control

Research Articles

Neurocomputational mechanism of controllability inference under a multi-agent setting

Research Articles

Evolution of phenotypic fluctuation under host-parasite interactions

Research Articles

Neural network features distinguish chemosensory stimuli in Caenorhabditis elegans

Research Articles

Approximate distance correlation for selecting highly interrelated genes across datasets

Research Articles

Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data

Research Articles

Deciphering the molecular mechanism of the cancer formation by chromosome structural dynamics

Research Articles

Identifying prognostic pairwise relationships among bacterial species in microbiome studies

Research Articles

'FBA'Predicting metabolic flux alterations using genome-scale metabolic models and differential transcriptomic data

Research Articles

Cluster size distribution of cells disseminating from a primary tumor

Research Articles

DNA methylation-based classifier and gene expression signatures detect BRCAness in osteosarcoma

Research Articles

Optimizing network propagation for multi-omics data integration

Research Articles

A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences

Research Articles

Diverse processing underlying frequency integration in midbrain neurons of barn owls

Research Articles

MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data

Research Articles

Memories in a network with excitatory and inhibitory plasticity are encoded in the spiking irregularity

Research Articles

Dynamic divisive normalization circuits explain and predict change detection in monkey area MT

Research Articles

Modelling the spatial and temporal constrains of the GABAergic influence on neuronal excitability

Research Articles

Binding free energy decomposition and multiple unbinding paths of buried ligands in a PreQ1 riboswitch

Research Articles

Causal inference regulates audiovisual spatial recalibration via its influence on audiovisual perception

Research Articles

Intriguing effects of selection intensity on the evolution of prosocial behaviors

Research Articles

Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT

Research Articles

A nowcasting framework for correcting for reporting delays in malaria surveillance

Research Articles

Multivariable association discovery in population-scale meta-omics studies

Research Articles

MGEnrichment: A web application for microglia gene list enrichment analysis

Research Articles

Cross-population coupling of neural activity based on Gaussian process current source densities

Research Articles

Inferred expression regulator activities suggest genes mediating cardiometabolic genetic signals

Research Articles

Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections

Research Articles

Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data

Research Articles

Discriminative feature of cells characterizes cell populations of interest by a small subset of genes

Research Articles

Attractive internuclear force drives the collective behavior of nuclear arrays in Drosophila embryos

Research Articles

Control of tissue homeostasis, tumorigenesis, and degeneration by coupled bidirectional bistable switches

Research Articles

Aedes-AI: Neural network models of mosquito abundance

Research Articles

De novo protein fold families expand the designable ligand binding site space

Research Articles

Hybrid dedicated and distributed coding in PMd/M1 provides separation and interaction of bilateral arm signals

Research Articles

Modeling the effects of Aedes aegypti's larval environment on adult body mass at emergence

Research Articles

Elastic energy savings and active energy cost in a simple model of running

Research Articles

CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure

Research Articles

Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients

Research Articles

Deciphering conformational selectivity in the A2A adenosine G protein-coupled receptor by free energy simulations

Research Articles

Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth

Research Articles

HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks

Research Articles

Protein domain-based prediction of drug/compound'target interactions and experimental validation on LIM kinases

Research Articles

Estimating the dimensionality of the manifold underlying multi-electrode neural recordings

Research Articles

A confirmation bias in perceptual decision-making due to hierarchical approximate inference

Research Articles

Integrating deep learning with microfluidics for biophysical classification of sickle red blood cells adhered to laminin

Research Articles

Sensory coding and contrast invariance emerge from the control of plastic inhibition over emergent selectivity

Research Articles

Crowd control: Reducing individual estimation bias by sharing biased social information

Research Articles

Binding induced functional domain motions in the argonaute characterized by adaptive advanced sampling

Research Articles

Dissecting cascade computational components in spiking neural networks

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