Forthcoming Articles

This site is managed by Brian Golding. Note that entries are retained for only thirty days. Currently only GBE, JME, MBE, and PNAS (selected articles), are provided.

Other online access

- Bioinformatics - Biometrika - Evolution - Evol Applications
- GBE - Genome Research - Genetics - J.Bioinfo. & Comp. Biol.
- J.Mol.Evol. - MBE - Mol. Phylogenetics & Evol - Nature
- Nucl. Acids Res. - PNAS - Science - Systematic Biology


Articles added in the last thirty days:

Jul 7 17:03Genome-wide Parallelism Underlies Rapid Freshwater Adaptation Fueled by Standing Genetic Variation in a Wild Fish by Hao Yang and others (MBE)
Jul 7 17:03Host-specific adaptation of Legionella pneumophila to single and multiple hosts by Anaísa B Moreno and others (MBE)
Jul 7 17:03"Select and Resequence" methods enable a genome wide association study of the dimorphic human fungal pathogenCoccidioides posadasii by Mark Voorhies and others (GBE)
Jul 5 14:03Positive selection of a starch synthesis gene and phenotypic differentiation of starch accumulation in symbiotic and free-living coral symbiont dinoflagellate species by Yuu Ishii and others (GBE)
Jul 4 20:00Detecting environmentally dependent developmental plasticity in fossilized individuals - Anieke Brombacher, et al. (PNAS)
Jul 4 17:03Detecting interspecific positive selection using convolutional neural networks by Charlotte West and others (MBE)
Jul 4 17:03Nested admixture during and after the Trans-Atlantic Slave Trade on the island of São Tomé by Marta Ciccarella and others (MBE)
Jul 4 17:03Divergence of leptin receptor and interleukin-6 receptor subunit b in early vertebrate evolution and physiological insights from the sea lamprey by Ningping Gong and others (MBE)
Jul 2 16:00Macroevolutionary changes in natural selection on codon usage reflect evolution of the tRNA pool across a budding yeast subphylum - Alexander L. , et al. (PNAS)
Jul 2 16:00Epigenetic cellular memory in Pseudomonas aeruginosa generates phenotypic variation in response to host environments - Elisabeth Vatareck, et al. (PNAS)
Jul 1 12:00Preservation bias obscures gradual Ordovician reef evolution - Juwan Jeon, et al. (PNAS)
Jul 1 12:00In silico evolution of globular protein folds from random sequences - Harutyun Sahakyan, et al. (PNAS)
Jun 30 17:03Inference of Gene Flow between Species from Genomic Data When the Mode, Direction, and Lineages are Misspecified by Yuttapong Thawornwattana and others (MBE)
Jun 30 17:03Pooled, long-read sequencing for structural variant characterization in schistosome populations by Shalini Nair and others (GBE)
Jun 30 17:03Evolution of the non-visual and visual opsin gene repertoire in ray-finned fishes by Maxime Policarpo and others (GBE)
Jun 28 20:00Promoting collective cooperation through temporal interactions - Yao Meng, et al. (PNAS)
Jun 28 17:03Extensive recombination suppression and genetic degeneration of a young ZW sex chromosome system in halfbeak fish by Teng-Fei Xing and others (MBE)
Jun 28 17:03Distribution and Evolutionary Trajectories of â-Lactamases in Vibrio: Genomic Insights from CARB-Type Enzymes in the Harveyi and Cholerae Clades by Yaofan Yang and others (GBE)
Jun 27 16:00Heritable symbiont producing nonribosomal peptide confers extreme heat sensitivity and antifungal protection on its host - Gerald P. , et al. (PNAS)
Jun 27 16:00Comparative performance of viral landscape phylogeography approaches - Simon Dellicour, et al. (PNAS)
Jun 27 16:00The adaptive state determines the impact of mutations on evolving populations - Malgorzata Tyczynska , et al. (PNAS)
Jun 27 16:00Diploidization in a wild rice allopolyploid is both episodic and gradual - Xin Wang, et al. (PNAS)
Jun 27 14:03Genetic and Environmental Factors Shape Rates of Plasticity: The Temporal Dynamics of Opsin Gene Expression in Aquatic Environments by César Bertinetti and others (MBE)
Jun 26 17:03Newly developed structure-based methods do not outperform standard sequence-based methods for large-scale phylogenomics by Giacomo Mutti and others (MBE)
Jun 26 17:03Comparative analysis of mammalian adaptive immune loci revealed spectacular divergence and common genetic patterns by Mariia Pospelova and others (MBE)
Jun 26 17:03Fitness effect of the isoniazid resistance mutation S315T of the catalase-peroxidase enzyme KatG ofMycobacterium tuberculosis by Ugo Bastolla and others (GBE)
Jun 25 14:03Cell compartment is a predictor of protein rate of evolution, but not in the manner expected: evidence against the extended complexity hypothesis by Juan Rivas-Santisteban and others (GBE)
Jun 25 12:00The importance of small-island populations for the long-term survival of endangered large-bodied insular mammals - Sabhrina Gita , et al. (PNAS)
Jun 25 07:41Sex-biased Migration and Demographic History of the Big European Firefly Lampyris noctiluca by Ana Catalán and others (MBE)
Jun 24 20:03HarbouringStarships: The accumulation of large Horizontal Gene Transfers in Domesticated and Pathogenic Fungi by Samuel O=92Donnell and others (GBE)
Jun 24 08:00Big evolutionary fireworks in tiny glass houses - Idan Banson, et al. (PNAS)
Jun 24 08:00Institutions of public judgment established by social contract and taxation - Taylor A. , et al. (PNAS)
Jun 23 14:03Genomic organization of Trypanosoma cruzi tRNA genes by Florencia D=EDaz-Viraqu=E9 and others (GBE)
Jun 23 14:03New Genome Assemblies for Poeciliidae: A Foundation for Adaptation Studies by Kara Ryan and others (GBE)
Jun 22 17:03Sweeps in Space: Leveraging Geographic Data to Identify Beneficial Alleles in Anopheles gambiae by Clara T Rehmann and others (MBE)
Jun 22 17:03Substantial hierarchical reductions of genetic and morphological traits in the evolution of rotiferan parasites by Holger Herlyn and others (GBE)
Jun 21 16:00Correction for Chihoub et al., The evolution of robustness and fragility during long-term bacterial adaptation - (PNAS)
Jun 21 14:03Chromosomal inversions and their potential impact on the evolution of arboviral vector Aedes aegypti by Jiangtao Liang and others (GBE)
Jun 19 20:00Homoploid hybridization adds clarity to the origins of octoploid strawberries - Zhen Fan, et al. (PNAS)
Jun 19 17:03The heterogametic transition in European Bufo toads switches the sex-linkage of key vertebrate sex-determination genes and associates with a large sex-chromosome-effect by Christophe Dufresnes and others (MBE)
Jun 18 20:00An ancient origin of the naked grains of maize - Regina A. , et al. (PNAS)
Jun 17 16:03Collective artificial intelligence and evolutionary dynamics - Udari Madhushani , et al. (PNAS)
Jun 17 16:03European mammal turnover driven by a global rapid warming event preceding the Paleocene-Eocene Thermal Maximum - Rodolphe Tabuce, et al. (PNAS)
Jun 17 16:03Deep mechanism design: Learning social and economic policies for human benefit - Andrea Tacchetti, et al. (PNAS)
Jun 17 16:03Collective cooperative intelligence - Wolfram Barfuss, et al. (PNAS)
Jun 17 16:03Tabula rasa agents display emergent in-group behavior - Raphael Köster, et al. (PNAS)
Jun 17 16:03Humans program artificial delegates to accurately solve collective-risk dilemmas but lack precision - Inês Terrucha, et al. (PNAS)
Jun 17 16:03Unilateral incentive alignment in two-agent stochastic games - Alex Mc, et al. (PNAS)
Jun 17 16:03Picking strategies in games of cooperation - Julian García, et al. (PNAS)
Jun 16 14:03Impact of Phylogenetic Method Choice on Indel Analyses in HIV-1 Subtype B by Micka=EBl Seppey and others (GBE)
Jun 16 14:03Mitonuclear coevolution in bumblebees (Bombus): genomic signatures and its role in climatic niche adaptation by Leonardo Tresoldi Gon=E7alves and others (GBE)
Jun 15 08:00Correction for Manthey et al., Rapid growth and the evolution of complete metamorphosis in insects - (PNAS)
Jun 14 14:03High gene expression predicts extremely low segregation of deleterious mutations in large penguin populations by Emiliano Trucchi and others (MBE)
Jun 14 14:03Dynamic Birth and Death of Argonaute Gene Family Functional Repertoire Across Caenorhabditis Nematodes by Daniel D Fusca and others (GBE)
Jun 13 17:03Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function by Sergi Valverde and others (MBE)
Jun 13 17:03Quantifying the evolution of SNPs that affect RNA secondary structure in Arabidopsis thaliana genes by Galen T Martin and others (MBE)
Jun 13 16:00Macroevolutionary analysis of polysynthesis shows that language complexity is more likely to evolve in small, isolated populations - Lindell Bromham, et al. (PNAS)
Jun 13 16:00Hamiltonella symbionts benefit whitefly fertilization by regulating the maternal protein Tudor-mediated piRNA pathway - Xiang Sun, et al. (PNAS)
Jun 13 16:00Whole-genome duplication leads to significant but inconsistent changes in climatic niche - Patrick G. , et al. (PNAS)
Jun 13 16:00Biparental inheritance of germline-specific chromosomes in the sea lamprey and their roles in oocytes - Vladimir A. , et al. (PNAS)
Jun 12 17:03Changes in Evolutionary Developmental Control Points in the Amniote Limb May Explain Hyperphalangy by Merijn A G de Bakker and others (MBE)
Jun 12 17:03Feature architecture-aware ortholog search with fDOG reveals the distribution of plant cell wall-degrading enzymes across life by Vinh Tran and others (MBE)
Jun 12 17:03Widespread genetic signals of visual system adaptation in deepwater cichlid fishes by Julia I Camacho Garc=EDa and others (MBE)
Jun 12 17:03The Data are Insufficient to Confidently Root the SARS-CoV-2 Phylogenetic Tree by Jesse D Bloom and Brandon Gaut (MBE)
Jun 12 17:03A Critical Reexamination of Recovered SARS-CoV-2 Sequencing Data by Florence D=E9barre and others (MBE)
Jun 12 17:03The Early Evolution of Tudor Genes in Holozoa and How Their Distribution Was Influenced by Life History Traits in Metazoa by Giovanni Piccinini and others (GBE)
Jun 12 17:03Exploiting Viral DNA Genomes to Explore the Dispersal History of African Swine Fever Genotype II Lineages in Europe by Fabiana G=E1mbaro and others (GBE)
Jun 12 12:00Evolution of gene order in prokaryotes is driven primarily by gene gain and loss - Shelly Brezner, et al. (PNAS)
Jun 11 08:00Deep origins, distinct adaptations, and species-level status indicated for a glacial relict seal - Ari Löytynoja, et al. (PNAS)
Jun 10 17:03Spatio-temporal tracking of three novel transposable element invasions in Drosophila melanogaster over the last 30 years by Riccardo Pianezza and others (MBE)
Jun 10 08:00No mass extinction for South American mammals at the Eocene-Oligocene transition - Laurie R. , et al. (PNAS)
Jun 10 08:00Eradication efforts catalyze rapid evolution in an invasive predatory fish - Liam J. , et al. (PNAS)
Jun 9 14:03Pervasive divergence in protein thermostability is mediated by both structural changes and cellular environments by Nilima Walunjkar and others (MBE)
Jun 9 14:03A general substitution matrix for structural phylogenetics. by Sriram G Garg and others (MBE)
Jun 9 14:03Genome structural variants shape adaptive success of an invasive urban malaria vector Anopheles stephensi by Alejandra Samano and others (MBE)
Jun 9 14:03Connectivity and adaptation patterns of the deep-sea ground-forming sponge Geodia hentscheli across its entire distribution by Sergi Taboada and others (MBE)
Jun 9 14:03Tripartite loops reverse antibiotic resistance by Farhan R Chowdhury and others (MBE)
Jun 9 14:03MEGA-GPT: Artificial Intelligence Guidance and Building Analytical Protocols Using MEGA Software by John B Allard and others (MBE)
Jun 9 14:03Highlight: MEGA into the New Generation of Computational Genetics by Pedro Andrade (MBE)
Jun 9 14:03Divergent plastid genomes in the deepest-branching apicomplexan parasites by Gordon Lax and others (GBE)
Jun 9 14:03Structural Enzymology, Phylogenetics, Differentiation, and Symbolic Reflexivity at the Dawn of Biology by Charles W Carter, et al. (GBE)
Jun 9 14:03RNA-sequencing Analysis of Hybrid Females Reveals a Dominance of Expression of Alleles From Outcrossing Species Over Those From Selfing Species by Yanwen Shao and others (GBE)
Jun 8 17:03Impact of the Zinc Antiviral Protein on the genomic composition of RNA viruses infecting vertebrates by Diego Sim=F3n and others (MBE)
Jun 8 17:03Exploring large protein sequence space through homology- and representation-based hierarchical clustering by John Z Chen and others (MBE)
Jun 8 17:03Genetic formation of Neolithic Hongshan people and demic expansion of Hongshan culture inferred from ancient human genomes by Rui Wang and others (MBE)
Jun 8 17:03Evolution of functional genomic diversity during a bottleneck by Fl=E1via Schlichta and others (GBE)
Jun 8 17:03Chromosome-level Assemblies of Three Candidatus Liberibacter solanacearum Vectors: Dyspersa apicalis (F=F6rster, 1848),Dyspersa pallida (Burckhardt, 1986), and Trioza urticae (Linnaeus, 1758) (Hemiptera: Psylloidea) by Thomas Heaven and others (GBE)