Forthcoming Articles

This site is managed by Brian Golding. Note that entries are retained for only thirty days. Currently only GBE, JME, MBE, and PNAS (selected articles), are provided.

Other online access

- Bioinformatics - Biometrika - Evolution - Evol Applications
- GBE - Genome Research - Genetics - J.Bioinfo. & Comp. Biol.
- J.Mol.Evol. - MBE - Mol. Phylogenetics & Evol - Nature
- Nucl. Acids Res. - PNAS - Science - Systematic Biology


Articles added in the last thirty days:

Jul 12 08:00Excessive parallelism in protein evolution of Lake Baikal amphipod species flock - Valentina Burskaia et al. (GBE)
Jul 12 08:00Contribution of cis- and trans-regulatory Evolution to Transcriptomic Divergence across Populations in the Drosophila mojavensis Larval Brain - Kyle M Benowitz, Joshua M Coleman, Carson W Allan, Luciano M Matzkin (GBE)
Jul 12 08:00Genomic analysis of the only blind cichlid reveals extensive inactivation in eye and pigment formation genes - Matthew L Aardema, Melanie L J Stiassny, S Elizabeth Alter (GBE)
Jul 12 08:00The genome of the softshell clam Mya arenaria and the evolution of apoptosis - David Plachetzki et al. (GBE)
Jul 12 08:00More Than One-to-Four via 2R: Evidence of an Independent Amphioxus Expansion and Two-Gene Ancestral Vertebrate State for MyoD-Related Myogenic Regulatory Factors (MRFs) - Madeleine E Aase-Remedios, Clara Coll-Lladó, David E K Ferrier (MBE)
Jul 11 12:00Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole genome duplications - Caifei Zhang et al. (MBE)
Jul 10 20:00Epidemics as an adaptive driving force determining lifespan setpoints - Peter V. Lidsky, Raul Andino (PNAS)
Jul 10 16:00PRE-1 Revealed Previous Unknown Introgression Events in Eurasian Boars during the Middle Pleistocene - Pengju Zhao et al. (GBE)
Jul 10 08:00A Uniquely Complex Mitochondrial Proteome from Euglena gracilis - Michael J Hammond et al. (MBE)
Jul 10 08:00Evolutionary Genomics at the Human-Environment Interface in Africa - Hannes Svardal et al. (MBE)
Jul 9 20:00Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions - Jonathan Sandoval-Castillo et al. (PNAS)
Jul 9 16:00Evolution of mutation rate in astronomically large phytoplankton populations - Marc Krasovec, Rosalind E M Rickaby, Dmitry A Filatov (GBE)
Jul 9 08:00GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene  Family Tree Inference under Gene Duplication, Transfer, and Loss - Benoit Morel, Alexey M Kozlov, Alexandros Stamatakis, Gergely J Szöllősi (MBE)
Jul 9 08:00Prdm9 inter-subspecific interactions in hybrid male sterility of house mouse - Amisa Mukaj et al. (MBE)
Jul 9 08:00A simulation study to examine the information content in phylogenomic datasets under the multispecies coalescent model - Jun Huang, Tomáš Flouri, Ziheng Yang (MBE)
Jul 9 08:00Recent demographic history inferred by high-resolution analysis of linkage disequilibrium - Enrique Santiago et al. (MBE)
Jul 8 08:00Maternal effect killing by a supergene controlling ant social organization - Amaury Avril, Jessica Purcell, Sébastien Béniguel, Michel Chapuisat (PNAS)
Jul 8 08:00Distinguishing Felsenstein zone from Farris zone using neural networks - Alina F Leuchtenberger et al. (MBE)
Jul 8 08:00Higher germline mutagenesis of genes with stronger testis expressions refutes the transcriptional scanning hypothesis - Haoxuan Liu, Jianzhi Zhang (MBE)
Jul 7 08:00Flat latitudinal diversity gradient caused by the Permian-Triassic mass extinction - Haijun Song et al. (PNAS)
Jul 7 08:00A tiny ornithodiran archosaur from the Triassic of Madagascar and the role of miniaturization in dinosaur and pterosaur ancestry - Christian F. Kammerer, Sterling J. Nesbitt, John J. Flynn, Lovasoa Ranivoharimanana, André R. Wyss (PNAS)
Jul 7 08:00A TAL effector-like protein of an endofungal bacterium increases the stress tolerance and alters the transcriptome of the host - Morgan E. Carter et al. (PNAS)
Jul 7 08:00Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses - Nicola F. Müller, Ugnė Stolz, Gytis Dudas, Tanja Stadler, Timothy G. Vaughan (PNAS)
Jul 7 08:00Collateral Toxicity Limits the Evolution of Bacterial Release Factor 2 toward Total Omnipotence - Hind Abdalaal et al. (MBE)
Jul 6 12:00Tumor necrosis factor superfamily: Ancestral functions and remodeling in early vertebrate evolution - Ignacio Marín (GBE)
Jul 6 12:00Detecting signatures of positive selection against a backdrop of compensatory processes - Peter B Chi, Westin M Kosater, David A Liberles (MBE)
Jul 6 12:00Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations - Sebastian Duchene et al. (MBE)
Jul 4 08:00Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications - María Touceda-Suárez et al. (MBE)
Jul 2 12:00Post-Admixture Selection on Chileans Targets Haplotype Involved in Pigmentation and Immune Defense Against Pathogens - Lucas Vicuña et al. (GBE)
Jul 2 08:00Male reproductive aging arises via multifaceted mating-dependent sperm and seminal proteome declines, but is postponable in Drosophila - Irem Sepil et al. (PNAS)
Jul 1 12:00Consequences of cryopreservation in diverse natural isolates of Saccharomyces cerevisiae - Kieslana M Wing, Mark A Phillips, Andrew R Baker, Molly K Burke (GBE)
Jun 30 20:00Ultrastructural, cytochemical and comparative genomic evidence of peroxisomes in three genera of pathogenic free-living amoebae, including the first morphological data for the presence of this organelle in Heteroloboseans - Arturo González-Robles et al. (GBE)
Jun 30 20:00Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates - Dan Shen et al. (GBE)
Jun 30 20:00Asteroid impact, not volcanism, caused the end-Cretaceous dinosaur extinction - Alfio Alessandro Chiarenza et al. (PNAS)
Jun 30 20:00Divergence of chemosensing during the early stages of speciation - Bas van Schooten et al. (PNAS)
Jun 30 20:00A demographic and evolutionary analysis of maternal effect senescence - Christina M. Hernández, Silke F. van Daalen, Hal Caswell, Michael G. Neubert, Kristin E. Gribble (PNAS)
Jun 30 20:00Broccoli: combining phylogenetic and network analyses for orthology assignment - Romain Derelle, Hervé Philippe, John K Colbourne (MBE)
Jun 30 20:00Co-evolution in hybrid genomes: nuclear-encoded rubisco small subunits and their plastid-targeting translocons accompanying sequential allopolyploidy events in Triticum - Changping Li et al. (MBE)
Jun 29 12:00Lineage and parent-of-origin effects in DNA methylation of honey bees (Apis mellifera) revealed by reciprocal crosses and whole-genome bisulfite sequencing - Xin Wu et al. (GBE)
Jun 29 12:00Bumblebee workers show differences in allele-specific DNA methylation and allele-specific expression - H Marshall, A R C Jones, Z N Lonsdale, E B Mallon (GBE)
Jun 29 12:00Defense response in Brazilian honey bees (Apis mellifera scutellata x spp.) is underpinned by complex patterns of admixture - Brock A Harpur et al. (GBE)
Jun 29 12:00Evolutionary History of the Globin Gene Family in Annelids - Flávia A Belato et al. (GBE)
Jun 28 08:00Evolution of Human Brain Size-Associated NOTCH2NL Genes Proceeds toward Reduced Protein Levels - Gerrald A Lodewijk et al. (MBE)
Jun 27 12:00The first draft genome assembly of Snow sheep (Ovis nivicola) - Maulik Upadhyay et al. (GBE)
Jun 27 12:00Comparative genomics reveals evolution of a beak morphology locus in a high-altitude songbird - Yalin Cheng et al. (MBE)
Jun 26 12:00Revisiting ceriantharian (Anthozoa) mitochondrial genomes: casting doubts about their structure and size - David Roy Smith (GBE)
Jun 26 12:00Only a single taxonomically restricted gene family in the Drosophila melanogaster subgroup can be identified with high confidence - Karina Zile, Christophe Dessimoz, Yannick Wurm, Joanna Masel (GBE)
Jun 26 12:00Recent common origin, reduced population size, and marked admixture have shaped European Roma genomes - Erica Bianco et al. (MBE)
Jun 25 20:00Convergent evolution of conserved mitochondrial pathways underlies repeated adaptation to extreme environments - Ryan Greenway et al. (PNAS)
Jun 25 16:00The coevolution of fungal mitochondrial introns and their Homing Endonucleases (GIY-YIG and LAGLIDADG) - Amalia H Megarioti, Vassili N Kouvelis (GBE)
Jun 25 16:00ModelTeller: model selection for optimal phylogenetic reconstruction using machine learning - Shiran Abadi et al. (MBE)
Jun 25 16:00Interspecific gene flow and the evolution of specialisation in black and white rhinoceros - Yoshan Moodley et al. (MBE)
Jun 25 16:00Pervasive selection against microRNA target sites in human populations - Andrea Hatlen, Antonio Marco (MBE)
Jun 24 12:00A new high-quality draft genome assembly of the Chinese cordyceps Ophiocordyceps sinensis - Ruihao Shu et al. (GBE)
Jun 24 12:00A genomic cluster containing novel and conserved genes is associated with cichlid fish dental developmental convergence - Nidal Karagic, Ralf F Schneider, Axel Meyer, C Darrin Hulsey (MBE)
Jun 23 20:00Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus - Nicholas J. Hawco et al. (PNAS)
Jun 22 20:00Mating in the absence of fertilization promotes a growth-reproduction versus lifespan trade-off in female mice - Michael Garratt, Heather Try, Kristina O. Smiley, David R. Grattan, Robert C. Brooks (PNAS)
Jun 22 20:00Genetic dominance governs the evolution and spread of mobile genetic elements in bacteria - Jerónimo Rodríguez-Beltrán et al. (PNAS)
Jun 20 08:00A behavior-manipulating virus relative as a source of adaptive genes for Drosophila parasitoids - D Di Giovanni et al. (MBE)
Jun 19 20:00Primordial emergence of a nucleic acid-binding protein via phase separation and statistical ornithine-to-arginine conversion - Liam M. Longo et al. (PNAS)
Jun 19 08:00Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins - Naazneen Khan et al. (GBE)
Jun 19 08:00Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications - Elise Parey et al. (MBE)
Jun 19 08:00How a Scorpion Toxin Selectively Captures a Prey Sodium Channel: the Molecular and Evolutionary Basis Uncovered - Shunyi Zhu, Bin Gao, Steve Peigneur, Jan Tytgat (MBE)
Jun 18 08:00Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data - Paul D Blischak, Michael S Barker, Ryan N Gutenkunst (MBE)
Jun 18 08:00Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril - Sadie R Wisotsky, Sergei L Kosakovsky Pond, Stephen D Shank, Spencer V Muse (MBE)
Jun 18 08:00Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids - Ming-Shan Wang et al. (MBE)
Jun 17 16:00Variable spontaneous mutation and loss of heterozygosity among heterozygous genomes in yeast - Duong T Nguyen et al. (MBE)
Jun 17 16:00Consequences of stability-induced epistasis for substitution rates - Noor Youssef, Edward Susko, Joseph P Bielawski (MBE)
Jun 16 16:00A novel microbialite-associated phototrophic Chloroflexi lineage exhibiting a quasi-clonal pattern along depth - Aurélien Saghaï et al. (GBE)
Jun 16 12:00Wild hummingbirds discriminate nonspectral colors - Mary Caswell Stoddard et al. (PNAS)
Jun 16 12:00Structure of the RECK CC domain, an evolutionary anomaly - Tao-Hsin Chang, Fu-Lien Hsieh, Philip M. Smallwood, Sandra B. Gabelli, Jeremy Nathans (PNAS)
Jun 16 12:00The Whi2p-Psr1p/Psr2p complex regulates interference competition and expansion of cells with competitive advantage in yeast colonies - Jana Maršíková et al. (PNAS)
Jun 15 12:00Genomic signatures of local adaptation in clam shrimp (Eulimnadia texana) from natural vernal pools - James G Baldwin-Brown, JGB, J G B Anthony D Long, ADL (GBE)
Jun 15 12:00Comparative analysis of genomic repeat content in gomphocerine grasshoppers reveals expansion of satellite DNA and helitrons in species with unusually large genomes - Abhijeet Shah, Joseph I Hoffman, Holger Schielzeth (GBE)
Jun 15 12:00Rampant nuclear transfer and substitutions of plastid genes in Passiflora - Bikash Shrestha, Lawrence E Gilbert, Tracey A Ruhlman, Robert K Jansen (GBE)
Jun 13 16:00Gene similarity networks unveil a potential novel unicellular group closely related to animals from the Tara Oceans expedition - Alicia S Arroyo, Romain Iannes, Eric Bapteste, Iñaki Ruiz-Trillo (GBE)