Thanks to everyone for your quick responses!! Responses to Draw Multiple Gene Trees: Lars Arvestad's PrIMETV draws embedded trees: http://prime.sbc.su.se/ The authors provide a web-based version as well, which is very easy to use. I was able to draw the individual gene trees within the same species tree, then merge all the images in Adobe Illustrator. DensiTree http://www.cs.auckland.ac.nz/~remco/DensiTree/DensiTree.html I used this program to illustrate the trees (>8000) produced by a Bayesian run. Very effective for showing the major patterns plus their relative occurrences. Other Suggestions I did not try: Dendroscope http://topiaryexplorer.sourceforge.net/ Check out ms by R. R. Hudson: http://home.uchicago.edu/~rhudson1/source/mksamples.html Jaime Elizabeth Blair, PhD Assistant Professor of Biology Franklin & Marshall College Lancaster PA 17604 Office (717) 291-3959 jaime.blair@fandm.edu http://edisk.fandm.edu/jaime.blair Jaime Blair