Dear colleagues,

Registration is open for the course "Manipulation of NGS Data for 
Genomic and Population Genetics Analyses" - 5th edition

Schedule: Online live sessions 5th, 7th, 12th, 13th, and 14th of June, 
2024; 13:00 to 17:00 (Madrid time zone).

Instructors: Dr. François Sab [1]ot [1] (Institute of Research for 
Development, France) and Julie [2] Orjuela (Institute of Research for 
Development, France)

More information and registration: 
https://www.transmittingscience.com/courses/genetics-and-genomics/manipulation-ngs-data-genomic-population-genetics-analyses/

Course programme:

  	* Introduction to NGS sequencing platforms.
  	* Introduction to basic command lines.
  	* Basic raw data manipulations (counting sequences, listing files).
  	* Raw data QC & Cleaning.
  	* Introduction to TOGGLe, a NGS pipeline framework.
  	* Mapping: principle, tools, execution.
  	* Mapping: cleaning, data control, realigning, duplicates marking.
  	* SNP calling: raw calling, cleaning calling, filtering.
  	* VCF manipulations: filtering on MAF, heterozygosity .
  	* Impact of SNPs on genes.
  	* Population genomics using sNMF.
  	* Context-based analyses.
  	* Piping large scale analyses for multiple samples using TOGGLe.
         * Testing new tools and different conditions to answer different
           biological questions.
         * Questions.

With best wishes

Sole

-- 
Soledad De Esteban-Trivigno, PhD
Transmitting Science
www.transmittingscience.com [3]

Check all Transmitting Science's courses here: 
https://www.transmittingscience.com/courses/

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Links:
------
[1] https://www.transmittingscience.com/instructors/francois-sabot/
[2] 
https://www.transmittingscience.com/instructors/christine-tranchant-dubreuil/
[3] http://www.transmittingscience.com