********************GradStudentPositions******************** Dear friends and colleagues, We have a 4-year PhD position in plant disease epidemiology and eco-evolutionary biology available at SLU Alnarp. Herd immunity is a form of indirect protection from disease that occurs when a sufficient percentage of a population becomes immune to infection through e.g., vaccination, thereby reducing the likelihood of infection for individuals who lack immunity. The concept of herd immunity was developed within the science of human epidemiology and has never been fully explored in relation to crops. The first aim of this project is to investigate whether herd immunity can be obtained in crop plantations through speckled use of 1) resistant cultivars, 2) biological control and 3) chemical fungicides. The second aim is to investigate whether use of these speckled measures creates selection mosaics with evolutionary micro-refuges for the pathogen, thereby preventing it from evolving counter-resistance. Garden strawberry infected by Botrytis cinerea (causing grey mould) will be used as a model system. The PhD student will be responsible for a large mesocosm experiment, in which susceptible or resistant strawberry plants will be subjected to speckled application of biological or chemical fungicides. Disease development in the plants, as well as resistance evolution in the pathogen, will be studied over four years. More information and a link to the online application system is available here: https://www.slu.se/en/about-slu/work-at-slu/jobs-vacancies/?rmpage=job&rmjob=7524&rmlang=UK Johan A. Stenberg Professor Sveriges lantbruksuniversitet Swedish University of Agricultural Sciences Department of Plant Protection Biology PO Box 190, SE-234 22 LOMMA Visiting address: Sundsv�gen 14 Tel: +46 40 41 53 78 johan.stenberg@slu.se, www.slu.se/stenberg --- N�r du skickar e-post till SLU s� inneb�r detta att SLU behandlar dina personuppgifter. F�r att l�sa mer om hur detta g�r till, klicka h�r E-mailing SLU will result in SLU processing your personal data. For more information on how this is done, click here "Johan A. Stenberg" (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca) ********************GradStudentPositions******************** PhD Position available at the Institute of Ecology and Evolution, University of Edinburgh, UK. Rethinking evolution in self-fertilising species. Supervisors: Matthew Hartfield, Konrad Lohse. A major goal of evolution is to understand how selection acts in the genome. Many species reproduce via self-fertilisation, where individuals make both male and female gametes that can be used to produce offspring. Although there are many classic expectations on how selfing species evolve, these ideas are being challenged by emerging population genomic data from selfing organisms that have revealed unusual patterns of genetic diversity and evolution. As a PhD student, you will have the opportunity to develop novel computational methods to understand fundamental evolutionary phenomena, and use the results to make inferences from big genomic datasets, especially those from Caenorhabditis nematodes and self-fertilising plants. Further information and application instructions: https://www.findaphd.com/phds/project/rethinking-evolution-in-self-fertilising-species/?p146811 This is a 4 year fully funded PhD project at UKRI stipend level with a start date of 1st September 2023, but an earlier start date can be arranged. This opportunity is open to UK and International students and provides funding to cover stipend and tuition fees. Application deadline 18th January 2023. Interested applicants can get in contact to discuss further. Matthew Hartfield m.hartfield@ed.ac.uk https://matthartfield.wordpress.com The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th' ann an Oilthigh Dhùn Èideann, clàraichte an Alba, àireamh clàraidh SC005336. Matthew Hartfield (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca) ********************Jobs******************** https://www.schooljobs.com/careers/hawaiiedu/jobs/3811562/assistant-professor-marine-biologist-i3 The School of Life Sciences (SoLS) at the University of Hawai`i at Manoa seeks candidates for the position of Assistant Professor who use integrative approaches to investigate the underlying mechanisms for responses of marine organisms to environmental change. Research should connect organismal biology to global change issues, and may integrate multiple biological, spatial, and/or temporal scales. The School of Life Sciences hosts the largest academic program on the University of Hawai`i's flagship campus, serving over 1,500 undergraduate majors and 150 graduate students for degrees in biology, botany, marine biology, microbiology, molecular cell biology, and zoology. Research interests of the 40 faculty members span all biological scales, with many focusing on ecology, evolution, and conservation biology. UH is the only recognized Native Hawaiian-serving R1 university and draws students from a diverse population. The School of Life Sciences is committed to serving our community and state and to excellence in research and teaching. UHM adheres to fair and inclusive recruitment and hiring procedures, and is a campus committed to diversity, equity, and inclusion excellence.For more information on the Manoa Strategic Plan, visit https://manoa.hawaii.edu/strategicplan/. For more information on the school, please visit https://manoa.hawaii.edu/lifesciences/. Duties and Responsibilities: - Develop and sustain an innovative, externally-funded research program - Mentor and advise graduate and undergraduate students in the School of Life Sciences - Provide high-quality teaching in support of the Marine Biology B.S. and B.A. degree programs - Develop and teach graduate courses in their areas of expertise that directly contribute to one or more of the graduate degrees offered by the School of Life Sciences - Serve on departmental, college, and university committees as appropriate - Render service to the professional and local/regional community that is relevant to the individual's academic specialty Minimum Qualifications: - Ph.D. in marine biology or a related field at the time of appointment from a college or university of recognized standing - Excellence and creativity in research, as demonstrated by publications in peer-reviewed journals and external research funding - Ability to teach undergraduate and graduate students in core classes in the Marine Biology major, such as algal diversity, invertebrate biology, marine ecology and evolution, and an advanced capstone course, among others - Ability to teach, mentor, collaborate, and interact with a diverse population - Commitment to supporting the key principles of the School of Life Sciences, which are inclusiveness, personal and professional integrity, and the pursuit of excellence Desirable Qualifications: - Postdoctoral research experience - Demonstrated experience and excellence in instruction of undergraduate and graduate courses in the life sciences, with an emphasis on marine biology - Experience working with diverse student and community populations - Vision of research that takes advantage of Hawai'i's unique location, resources, and faculty expertise in the School of Life Sciences, other university units, and state and federal agencies engaged in marine research To Apply: Click on the "Apply" button on the top right corner of the screen and attach the required documents. Applicant's must submit: - Cover letter in which you identify the position to which you are applying and indicate how you satisfy the minimum and desirable qualifications - Curriculum vitae - Statement of research interests, activities, and plans (up to 3 pages in length) - Statement of teaching philosophy, interests, and plans (up to 2 pages in length) - Copies of up to three relevant publications - Names and contact information (including email addresses and telephone numbers) for three professional references. Content addressing the candidate's approach and commitment to diversity, equity, and inclusion should be directly incorporated into the research and teaching statements. Additional information about Manoa's Strategic Vision as a Native Hawaiian place of learning can be found here: https://manoa.hawaii.edu/strategicplan/. Official transcripts with proof of degree conferred will be required upon hire. Inquiries: Clifford Morden, cmorden@hawaii.edu Bob Thomson thomsonr@hawaii.edu (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca) ********************PostDocs******************** Postdoctoral Research evoldir@evol.biology.mcmaster.ca This NSF DISES funded postdoctoral fellow will conduct genomic research on beaver, mink and muskrat as part of an interdisciplinary project on the North American fur trade. The project deploys a diverse methodological toolkit including ancient DNA, stable isotope analysis, zooarchaeology,Research Associate- Closing Date Dec 15: morphometrics to explore how different cultural practices shaped species and ecological outcomes and how those environmental changes shaped future decisions, practices, and social dynamics. The goal of this position is to cross-train an individual with a traditional genomics/ bioinformatics background in ancient DNA, community engagement, and historical ecology. This postdoc will be directly supervised by Courtney Hofman at the University of Oklahoma, and with additional mentoring by Alexis Mychajliw (Middlebury College) and Torben Rick (Smithsonian National Museum of Natural History), facilitating exposure to multiple research environments including archaeological field work and museum collections, while building on the postdoc's existing strengths. Duties: * Collaborate with PIs and project technicians on study design and data generation. * Work closely with the PIs and project stakeholders on collaborative activities with tribal communities and resource managers. * Conduct bioinformatic analyses on ancient and modern furbearer genomes. * Write manuscripts in support of the project. * Mentor undergraduate and visiting students. * Contribute to the LMAMR community through participation in LMAMR meetings and activities. * Co-write grants for additional funding and support. * Participate in science communication endeavors. * Develop strategies for integrating interdisciplinary datasets (isotopes, DNA, morphometrics, etc.) * Travel for project meetings/sample collection as needed Required Education: PhD in Life Sciences (preferably genomics, evolutionary biology and/or conservation biology) ** or Anthropology with genomics experience Skills: * Strong background in population genetics and bioinformatics * Experience analyzing whole genome datasets * Experience with ancient DNA or degraded DNA (not required but useful) Ideal postdoc will be interested in strengthening their skills in informatics, student mentorship, and diversity, equity and inclusion practices. Start date is flexible but ideally early 2023 and renewable up to 3 years dependent on annual review Diversity Statement: The University of Oklahoma is committed to achieving a diverse, equitable, and inclusive university community by recognizing each person's unique contributions, background, and perspectives. The University of Oklahoma strives to cultivate a sense of belonging and emotional support for all, recognizing that fostering an inclusive environment for all is vital in the pursuit of academic and inclusive excellence in all aspects of our institutional mission. Equal Employment Opportunity Statement: The University of Oklahoma, in compliance with all applicable federal and state laws and regulations, does not discriminate based on race, color, national origin, sex, sexual orientation, genetic information, gender identity, gender expression, age, religion, disability, political beliefs, or status as a veteran in any of its policies, practices, or procedures. This includes, but is not limited to, admissions, employment, financial aid, housing, services in educational programs or activities, and health care services that the University operates or provides The Laboratories of Molecular Anthropology and Microbiome Research (LMAMR ) represent an interdisciplinary partnership that seeks to understand biocultural, ecological and evolutionary dimensions of life. We study biomolecules retrieved from extant, forensic, historical, archaeological, and environmental materials, with special attention to humans and human-associated organisms including commensals and pathogens. Our mission includes innovation in research and commitment to training in molecular and systems biology approaches, with a collaborative effort towards conservation, cultural respect, community engagement and outreach, both regional and international. We are an interdisciplinary group of ~30 faculty, staff, postdocs, and students with home departments in anthropology, biology, microbiology, and chemistry. Complete the application here- Job Number 222683 ***And forward CV and cover letter to Courtney Hofman, courtney.hofman@ou.edu*** Dec 15 deadline Please reach out if you have any questions about the position. -- Courtney Hofman, PhD President's Associates Presidential Professor Laboratories of Molecular Anthropology and Microbiome Research University of Oklahoma courtney.hofman@ou.edu she/her/hers Research Associate- Closing Date Dec 15: (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca) "Hofman, Courtney A." (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca) ********************PostDocs******************** The Professorship for Population Genetics at the Technical University of Munich, TUM School of Life Sciences, hires a Post-Doctoral researcher in the field of fungal population genomics The focus of our group is on understanding population genetics/genomics processes underlying plant parasite coevolution. We concentrate on developing new theoretical framework and statistical inference methods making use of full genome data to uncover coevolutionary dynamics. In the current project, we study powdery mildew fungi as biotrophic pathogens infecting agriculturally relevant crop plant species and focus on species of the genus Blumeria that infect cereal host plants. We aim at quantifying the evolutionary forces (recombination, genetic drift, selection) driving the dynamics of transposable elements (TEs) and appearance of novel functionalities in the genome of Blumeria hordei. To this end, we want to integrate population genomics, proteomics, bioinformatics and functional biology to understand how genomic innovations translate into novel virulence function in powdery mildew. The candidate should have strong background in evolutionary genetics or theoretical population genetics. Knowledge and practical experience in bioinformatics and analysis of full genome data is desired. Furthermore, English skills, both written and spoken, are essential and the candidate should be willing to work in a team with plant molecular biologists. She/he should have a PhD in evolutionary genomics, computational biology or closely related disciplines. The project will be carried out in the group of Prof. Aur�lien Tellier at the TUM campus in Freising-Weihenstephan, close to Munich. The project is part of the newly funded collaborative research centre TRR356 facilitating strong interactions among groups with overlapping and complementary expertise in plant microbe interactions. Our project is a joined project with the group of Prof. Dr. Ralph H�ckelhoven (TUM Chair of Phytopathology) and will be additionally supported by central projects on bioinformatics and data management. In addition, we have several collaborations both national and international and direct access to state of the art technology for genomics, proteomics, and bioinformatics. The Technical University of Munich is an equal opportunity employer and particularly welcomes applications from qualified women and individuals with disabilities. The salary is according to German/Bavarian income level TV-L E13 (100%). Please send your comprehensive application including a letter of motivation (1 page), your CV, MSc and PhD certificates, list of publications, and names of 2 potential referees as a single pdf file by email to: silke.bauer@tum.de. Informal enquiries to Prof. A. Tellier (aurelien.tellier@tum.de) are welcome. Applications will be reviewed regularly from December 10th 2022 on but accepted until a suitable candidate is found. Website of Group of Population Genetics Prof. Aur�lien Tellier, PhD aurelien.tellier@tum.de TUM School of Life Sciences Technical University of Munich Lisel-Beckmann Strasse 2 D-85354 Freising-Weihenstephan Aurelien Tellier (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca) ********************WorkshopsCourses******************** Dear all, there are still places left on the 2nd edition of the 2-day course "Introduction to R Shiny" in January (10th-11th) Course website: ( https://www.physalia-courses.org/courses-workshops/shiny/ ) After completing the course, you'll be able to: - Understand the structure of a Shiny application - Read the code used to create a Shiny app and understand its semantic - Have a solid knowledge of Shiny reactivity concepts - Create a Shiny app and deploy it to shinyapps.io Here is the complete list of our courses and Workshops: https://www.physalia-courses.org/courses-workshops/ Have a nice weekend, Carlo Carlo Pecoraro, Ph.D Physalia-courses DIRECTOR info@physalia-courses.org mobile: +49 17645230846 Follow us on ( https://mas.to/@PhysaliaCourses ) "info@physalia-courses.org" (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca) ********************Conferences******************** Dear All, At the next CIGENE seminar, we are pleased to welcome Tanja Pyhäjärvi, who will tell us about "forest tree population genomics." https://www.helsinki.fi/en/researchgroups/forest-genomics Time: Wednesday, Dec 7th, 12-13 (Oslo time) For more information, check out the seminar website: https://cigene.no/cigene-seminar-series/ Zoom link: https://nmbu.zoom.us/j/67064421833 See you soon! Best, Marie Marie SAITOU, Ph.D. Tenure-Track Principal Investigator, Centre of Integrative Genetics (CIGENE), Faculty of Biosciences, Norwegian University of Life Sciences https://sites.google.com/view/saitou-lab Marie Saito (to subscribe/unsubscribe the EvolDir send mail to golding@mcmaster.ca)