********************Jobs******************** 3 positions opened at the Rockefeller University (NYC, USA) in my group (https://vertebrategenomelab.org) to work on the Vertebrate Genomes Project (https://vertebrategenomesproject.org) and the Human Pan Genomes project (https://humanpangenome.org). Looking for 2 bioinformaticians acquainted with genome assembly and 1 wet-lab technician with experience in NGS library prep and sequencing prefered. Olivier Fedrigo Email me if interested: ofedrigo@rockefeller.edu ofedrigo@rockefeller.edu ********************Jobs******************** Tenure-Track Faculty Position The Biodiversity Research Center, Academia Sinica (BRCAS; http://biodiv.tw/), Taipei, Taiwan, invites applications for a tenure-track position at the Assistant or Associate Research Fellow level, which is equivalent to "assistant professor" or "associate professor". We wish to strengthen research in Microbial diversity in this round of recruitment. Nevertheless, we will also consider outstanding applicants in other fields of Biodiversity. The applicants must possess a PhD, preferably with postdoctoral experience and a successful track record of scientific productivity. We seek outstanding candidates of all research disciplines dedicated to understanding the diversity and function of microorganisms across all natural habitats, preferring, but not limited to, algae, protist or virus. The center provides good start-up funding and substantial internal support for new PIs. The center consists of four divisions: Marine biodiversity and ecosystems, Terrestrial biodiversity and ecosystems, Molecular and genomic evolution, and Microbial diversity. The center is in charge of the Taiwan Biodiversity Information Facility (TaiBIF) which is part of GBIF and a sequencing core with multiple platforms of second and third generation high throughput sequencers. Academia Sinica is well equipped with the latest research facilities across the life and physical science disciplines and inter-disciplinary collaborations are strongly encouraged. The position will be open until filled; however, the first review will be conducted in July 2021. Applicants should submit her/his CV (including a list of publications), 3$B!](B5 representative papers (PDF files), and a statement of past achievements and future research interests to our center secretary Ms. Miao-Suey Lin (zomslin@gate.sinica.edu.tw). Please indicate the rank to which you would like to apply. In addition, three recommendation letters should be requested by the applicants and sent from the referees directly to Ms. Miao-Suey Lin. Also see: https://www.biodiv.tw/zh_joinus-20210429183003. Ko-Hsuan chen ********************Other******************** We are pleased to announce the preliminary release of the EukMap taxonomybrowser (https://eukmap.unieuk.org/), part of the suite of applicationscoming from UniEuk. This dynamic system will allow for rapid communitycuration of eukaryotic taxonomy, keeping pace with current changes.A starting version of the taxonomy was uploaded on June 11, 2021 and marksthe official start of the UniEuk taxonomy, with unique IDs attached to all taxa and directly accessible in the form.This starting point was derived from the ISOP-supported classification ofeukaryotes in Adl et al. 2019 (doi:10.1111/jeu.12691), revised to includephylogenetic information from the more recent literature and from the other UniEuk activities (EukRef and EukBank).The system includes several metadata fields attached to taxa, includingsequence data (automatically cross-linked to the European NucleotideArchive at EMBL-EBI at each EukMap release). As the first rollout from the expanding UniEuk data platform, we invitethe community to browse the taxonomy(https://eukmap.unieuk.org/taxonomy/)and find the documentation for the software here(https://github.com/UniEuk/contributions/wiki). While we are working on the workflow that will make EukMap not just a taxonomy browser but also a taxonomy editor, updates will happen on a lineage-specific basis, by replacing existing subtrees in EukMap with a more complete set of information on taxa and their metadata. Community members are encouraged to start contributing to this effort via a github repository. You can provide requests to add new/missing taxa and their metadata (inparticular sequence data), or update/correct existing taxa and theirmetadata. For now these requests can be made via a "UniEuk contributions" GitHubrepository (https://github.com/UniEuk/contributions/) - its wiki will provide a complete step-by-step "how to" to guide users through the procedure, with templates of the file format needed. Once reviewed, contributions will be imported into the UniEuk taxonomy and all imported files will be available on the GitHub to all contributors for further improvement. -- Chris Lane Evolution and Marine Biology Graduate Coordinator Professor, Department of Biological Sciences University of Rhode Island 120 Flagg Rd Kingston, RI. 02881 Office: CBLS 277 Ph (401) 874-2683 http://cels.uri.edu/bio/lanelab/ Christopher Lane ********************PostDocs******************** The Marine Genomics Laboratory (MGL) at Texas A&M University - Corpus Christi is seeking a highly motivated individual to join our team of researchers as a Postdoctoral Research Associate in Fisheries and Aquaculture Genetics. The candidate is expected to work independently and will be in charge of a recently funded project to use Close-Kin Mark Recapture (CKMR) to estimate the census size of red snapper, Lutjanus campechanus, off the U.S. Atlantic seaboard. The project involves designing and optimizing Genotyping-by-Thousands (GT-seq) panels, deploying these panels to mass-genotype red snapper, preparing ddRAD libraries, and testing and optimizing CKMR strategies for marine fishes with large population sizes. The candidate will lead a team that includes two laboratory technicians and will interface with collaborating scientists at University of Florida and NOAA. This is a salaried two-year position, offered with full benefits. Responsibilities: * Generate ddRAD-seq DNA libraries. * Prepare and analyze GT-seq data * Bioinformatic processing of next-generation sequencing data and genetic association analysis. * Prepare manuscripts for publications in peer-reviewed, scientific journals. * Keep current with appropriate literature. * Participate in writing proposals to funding sources. * Attend scientific meetings to disseminate research results. * Communicate and coordinate with collaborators. * Conduct final CKMR analysis. * Perform other duties as required. Qualifications: * Doctorate in Biological Sciences or related by date of hire. * Relevant publication record. * Experience with management of large data sets. * Strong statistical and computational background. * Familiarity with appropriate molecular biology techniques. * Intermediate MS Office skills. * Ability to effectively utilize a computer and applicable software to perform statistical analyses, present data and perform other computer related tasks. * Ability to work with nucleic acids and analyze molecular data. * Ability to multi-task and work cooperatively with others. Preferred Qualifications: * Experience with preparation of next-generation sequencing libraries. * Experience with GT-seq. * Experience with standard bioinformatics software, Unix/Linux, and R and other programming. * Proficiency with Microsoft Office (primarily Word and Excel). All positions are security-sensitive. Applicants are subject to a criminal history investigation, and employment is contingent upon the institution's verification of credentials and/or other information required by the institution's procedures, including the completion of the criminal history check. Equal Opportunity/Affirmative Action/Veterans/Disability Employer committed to diversity. To APPLY: https://tamus.wd1.myworkdayjobs.com/en-US/TAMUCC_External/job/Corpus-Christi-TAMUCC/Postdoctoral-Research-Associate-in-Fisheries-and-Aquaculture-Genetics_R-038895 David S Portnoy Associate Professor Ruth A. Campbell Professor of Marine Biology Texas A&M University Corpus Christi 6300 Ocean Dr. Unit 5892 Corpus Christi, TX 78412 (361)-825-2859 "Portnoy, David" ********************PostDocs******************** The Department of Biological Sciences at Smith College invites applications for a benefits eligible postdoctoral position, focusing on genome evolution in microeukaryotes (aka protists), to begin as early as August 1, 2021. The bulk of the work will focus on bioinformatic analyses of data generated in the lab from �shell-building amoebae� in both Arcellinida and Rhizaria. The initial appointment is for one year, with the possibility of extending for additional years. The position will be housed in Professor Laura Katz's laboratory in the Department of Biological Sciences; questions should be directed to lkatz@smith.edu. The aims of this work include characterizing genomes from poorly-studied and uncultivable lineages, and reconstructing the evolutionary history of both genes and species (i.e. species delineation). The ideal candidate will: 1) be a productive researcher with interests in both biodiversity and phylogenomics of microorganisms; 2) have experience identifying and isolating diverse protists;3) have knowledge of bioinformatic and/or phylogenomic tools; 3) have excellent communication and interpersonal skills; and 4) be interested in collaborating with graduate and undergraduate students in the laboratory. Research in the Katz lab aims to elucidate principles of the evolution in eukaryotesthrough analyses of microbial groups, and to assess how these principles apply(or fail to apply) to other organisms. Currently we focus on three interrelated areas: (1) characterizing evolutionary relationships among eukaryotes using single-cell �omics� and phylogenomics; (2) exploring the evolution of germline vs somatic genomes; and (3) describing the phylogeography and biodiversity of protists in local environments (e.g. bogs, fens, coastal habitats). Additional information can be found at https://apply.interfolio.com/88547. Review of applications will begin on June 21, 2021 Laura A. Katz, Elsie Damon Simonds Professor Editor in Chief, Genome Biology and Evolution Department of Biological Sciences Burton Hall 201 / 44 College Lane Smith College Northampton, MA 01063 Ph: 413-585-3825 Skype: laura_a_katz; Zoom: https://smith.zoom.us/my/laurakatz lkatz@smith.edu ********************PostDocs******************** Postdoctoral Fellowship in Freshwater Ecology and Evolution at McGill University Sponsored by the Groupe de Recherche Interuniversitaire en Limnologie et en environnment aquatique (GRIL) The GRIL node at McGill University comprises eight aquatic scientists (see below) that span a broad range of expertise; we are advancing knowledge regarding landscape-scale processes, long-term changes in aquatic structure and function as well as ecosystem-scale trophic interactions and evolutionary dynamics. We are also connected to a larger interuniversity group (GRIL), that has a long-standing history of research excellence. To advance bold new ideas in Freshwater Ecology and Evolution and to facilitate new collaborations among this group as well as other McGill students & faculty, we are looking to recruit a post-doctoral fellow. Broadly, we will select a candidate to develop projects that bring our research groups together, rather than working exclusively with only one or two faculty members. In addition to conducting their own original research, the successful candidate will also collaborate with the interuniversity GRIL group on data syntheses. Assuming satisfactory performance, the selected postdoctoral fellow will be provided funding for two years. The candidate would receive a salary of $44,000/yr. + McGill University benefits. Application requirements: Candidates will be required to submit their CV, a research proposal in Freshwater Ecology and Evolution (approximately 2 pages in length), three representative publications and the names and contact information for three references. More information about GRIL-McGill members can be found on each of the respective PIs websites listed below. We will start reviewing application on July 10th, 2021. Please send your applications as a single PDF file (file name as GRIL_lastname.firstname.pdf) to melania.cristescu@mcgill.ca GRIL-McGill members, websites & their areas of expertise: Rowan Barrett (associate member) Elena Bennett Adaptation, Ecological and Evolutionary Genomics Ecosystem Services, Land-Water links, Biogeochemistry Jeffrey Cardille Melania Cristescu Machine learning, Earth engine, Remote sensing Population genetics, Invasive species, Environmental DNA Gregor Fussmann Irene Gregory-Eaves Experimental ecology, Biodiversity, Community dynamics Global Change, Anthropocene, Paleoecology Andrew Hendry Anthony Ricciardi Eco-evolutionary dynamics, Contemporary evolution Biological invasions, Animal ecology, Food webs Melania Cristescu ********************PostDocs******************** PostDoc:Krakow_JagiellonianU. Adaptation_Genomics We are extending the deadline for PostDoc applications! We are looking for a postdoctoral researcher to join Genomics and Experimental Evolution Group at Jagiellonian University, Institute of Environmental Sciences. The position is offered for two years and is funded from the Polish National Science Centre grant Environment-dependent balancing selection in a gene involved in sexual conflict. The position is available from autumn, but the starting date is flexible. Institute of Environmental Sciences, Jagiellonian University, Krakow, Poland (www.eko.uj.edu.pl/en) is one of the strongests centres of research in evolutionary biology in Central Europe. Krakow is a beautiful medieval city with a rich history and a lively cultural life. The project The maintenance of genetic variation, enabling populations to adapt to novel environments, is one of the greatest puzzles in evolutionary biology, because ubiquitous directional selection should lead to depletion of genetic variation in selected traits. This is especially the case with sexually selected traits, in which directional selection is particularly strong. Yet, substantial genetic variance in these traits is maintained. A potent force proposed to maintain genetic variation is balancing selection, but cases of a detailed dissection of the mechanisms of that maintain balanced polymorphisms are extremely rare. The project will likely provide a textbook example of balancing selection in action. We aim to investigate the maintenance of polymorphism in Phosphogluconate dehydrogenase (6Pgdh), a sexually selected gene associated with sexual conflict in the bulb mite Rhizoglyphus robini. 6Pgdh polymorphism (with two alleles, S and F) is associated with differences in male reproductive success. The S-bearers have advantage in male-male competition, but decrease fecundity of their partners. Previous studies suggest that the nonsynonymous polymorphism defining F and S alleles is under (relatively) long-term environment-dependent balancing selection. The project is aimed at identifying mechanisms driving this selection and investigating its molecular signitures. Responsibilities A PostDoc will look for the molecular signatures of balancing selection around the 6Pgdh gene and attempt to estimate the age of the 6Pgdh. We expect a strong signal of long-term balancing selection within the genomic region centered on the F/S defining nonsynonymous polymorphism. The PostDoc will also be involved in gathering/analyzing field data to evaluate the levels of 6Pgdh polymorphism in natural populations and determine environmental factors affecting 6Pgdh allele frequencies in the field. This second task will be realized with the cooperation of a PhD student and PI. Requirements The successful candidate will have a PhD in biology, or other relevant field acquired no sooner than in 2014. The candidate will have experience in the analyses of population genomics data, including searching for the signals of balancing selection in the genome. We are looking for a candidate with a strong publication record, strong background in Evolutionary Biology and skills in data analysis. Excellent English, organizational and communication skills are also required. Salary The salary is 100 000 PLN/year gross (ca. 23000 euro; before taxes and insurances). Note that living costs in Poland are substantially lower than in the west of the EU, so this amount of money ensures a sufficiently good life standard. Documents Please send a CV including contact details for two references and a cover letter to Agata Plesnar-Bielak (agata.plesnar@uj.edu.pl). The applications should be sent until July 5 th 2021. For more information, please e-mail Agata Plesnar-Bielak. agata.plesnar@gmail.com ********************PostDocs******************** The Department of Biological Sciences at Smith College invites applications for a benefits eligible postdoctoral position, focusing on genome evolution in microeukaryotes (aka protists), to begin as early as August 1, 2021. The bulk of the work will focus on bioinformatic analyses of data generated in the lab from �shell-building amoebae� in both Arcellinida and Rhizaria. The initial appointment is for one year, with the possibility of extending for additional years. The position will be housed in ProfessorLaura Katz's laboratory in the Department of Biological Sciences; questions should be directed tolkatz@smith.edu.The aims of this work include characterizing genomes from poorly-studied and uncultivable lineages, and reconstructing the evolutionary history of both genes and species (i.e. species delineation). The ideal candidate will: 1) be a productive researcher with interests in both biodiversity and phylogenomics of microorganisms; 2) have experience identifying and isolating diverse protists;3) have knowledge of bioinformatic and/or phylogenomic tools; 3) have excellent communication and interpersonal skills; and 4) be interested in collaborating with graduate and undergraduate students in the laboratory. Additional information can be found athttps://apply.interfolio.com/88547. Review of applications will begin on June 21, 2021 Laura A. Katz, Elsie DamonSimonds Professor Editor in Chief, Genome Biology and Evolution Department of Biological Sciences Burton Hall 201 / 44 College Lane Smith College Northampton, MA 01063 Ph:413-585-3825 Skype: laura_a_katz; Zoom:https://smith.zoom.us/my/laurakatz Office hours: M 2:00-2:30pm, Th 2:15-2:45 here Looking to make an appointment?Sign out a grey box here For letters of recommendation, clickhere; for Bio advising help, clickhere Laura Katz